Gene : Seita.1G089700 S. italica v2.2
Defline:  (1 of 5) PTHR10943 - 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT Genomic Order:  897
Name:  ? Seita.1G089700 Secondary Identifier:  ? PAC:32694458
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G089700 0.5kb upstream 0.5kb upstream 7486 true scaffold_1: 7923330-7930815 Setaria italica
Seita.1G089700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7930316-7930815 Setaria italica
Seita.1G089700 0.5kb downstream 0.5kb downstream 7486 true scaffold_1: 7922830-7930315 Setaria italica
Seita.1G089700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7922830-7923329 Setaria italica
Seita.1G089700 1.0kb upstream 1.0kb upstream 7986 true scaffold_1: 7923330-7931315 Setaria italica
Seita.1G089700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7930316-7931315 Setaria italica
Seita.1G089700 1.0kb downstream 1.0kb downstream 7986 true scaffold_1: 7922330-7930315 Setaria italica
Seita.1G089700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7922330-7923329 Setaria italica
Seita.1G089700 2.0kb upstream 2.0kb upstream 8986 true scaffold_1: 7923330-7932315 Setaria italica
Seita.1G089700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7930316-7932315 Setaria italica
Seita.1G089700 2.0kb downstream 2.0kb downstream 8986 true scaffold_1: 7921330-7930315 Setaria italica
Seita.1G089700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7921330-7923329 Setaria italica
Seita.1G089700 5.0kb upstream 5.0kb upstream 11986 true scaffold_1: 7923330-7935315 Setaria italica
Seita.1G089700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7930316-7935315 Setaria italica
Seita.1G089700 5.0kb downstream 5.0kb downstream 11986 true scaffold_1: 7918330-7930315 Setaria italica
Seita.1G089700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7918330-7923329 Setaria italica
Seita.1G089700 10.0kb upstream 10.0kb upstream 16986 true scaffold_1: 7923330-7940315 Setaria italica
Seita.1G089700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7930316-7940315 Setaria italica
Seita.1G089700 10.0kb downstream 10.0kb downstream 16986 true scaffold_1: 7913330-7930315 Setaria italica
Seita.1G089700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7913330-7923329 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187516 5267 Panicoideae View MSA
124569957 5269 Grass View MSA
122042231 5273 Angiosperm View MSA
123428994 5275 Viridiplantae View MSA
121346933 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 74.649     High High
cufflinks 58.369     High  
cufflinks 48.163     High  
cufflinks 42.058     High  
cufflinks 38.752     High Low
cufflinks 59.653     High  
cufflinks 42.299     High  
cufflinks 43.169     High  
cufflinks 41.971     High  
cufflinks 45.431     High  
cufflinks 69.292     High High
cufflinks 49.261     High  
cufflinks 48.544     High  
cufflinks 40.817     High Low
cufflinks 65.002     High High
cufflinks 45.547     High  
cufflinks 55.089     High  
cufflinks 66.743     High High
cufflinks 38.885     High Low
cufflinks 61.356     High  

0 Strain