Gene : Seita.1G090600 S. italica v2.2
Defline:  (1 of 1) PTHR21286 - NUCLEAR PORE COMPLEX PROTEIN NUP160 Genomic Order:  906
Name:  ? Seita.1G090600 Secondary Identifier:  ? PAC:32695256
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G090600 0.5kb upstream 0.5kb upstream 14685 true scaffold_1: 7973525-7988209 Setaria italica
Seita.1G090600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7987710-7988209 Setaria italica
Seita.1G090600 0.5kb downstream 0.5kb downstream 14685 true scaffold_1: 7973025-7987709 Setaria italica
Seita.1G090600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7973025-7973524 Setaria italica
Seita.1G090600 1.0kb upstream 1.0kb upstream 15185 true scaffold_1: 7973525-7988709 Setaria italica
Seita.1G090600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7987710-7988709 Setaria italica
Seita.1G090600 1.0kb downstream 1.0kb downstream 15185 true scaffold_1: 7972525-7987709 Setaria italica
Seita.1G090600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7972525-7973524 Setaria italica
Seita.1G090600 2.0kb upstream 2.0kb upstream 16185 true scaffold_1: 7973525-7989709 Setaria italica
Seita.1G090600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7987710-7989709 Setaria italica
Seita.1G090600 2.0kb downstream 2.0kb downstream 16185 true scaffold_1: 7971525-7987709 Setaria italica
Seita.1G090600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7971525-7973524 Setaria italica
Seita.1G090600 5.0kb upstream 5.0kb upstream 19185 true scaffold_1: 7973525-7992709 Setaria italica
Seita.1G090600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7987710-7992709 Setaria italica
Seita.1G090600 5.0kb downstream 5.0kb downstream 19185 true scaffold_1: 7968525-7987709 Setaria italica
Seita.1G090600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7968525-7973524 Setaria italica
Seita.1G090600 10.0kb upstream 10.0kb upstream 24185 true scaffold_1: 7973525-7997709 Setaria italica
Seita.1G090600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7987710-7997709 Setaria italica
Seita.1G090600 10.0kb downstream 10.0kb downstream 24185 true scaffold_1: 7963525-7987709 Setaria italica
Seita.1G090600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7963525-7973524 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190994 5267 Panicoideae View MSA
124573309 5269 Grass View MSA
122043780 5273 Angiosperm View MSA
121346160 5274 Embryophyte View MSA
123425689 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.204        
cufflinks 7.651       High
cufflinks 4.683        
cufflinks 2.56       Low
cufflinks 2.45       Low
cufflinks 6.752       High
cufflinks 4.711        
cufflinks 3.916        
cufflinks 4.816        
cufflinks 2.356       Low
cufflinks 5.777        
cufflinks 4.174        
cufflinks 3.66        
cufflinks 5.575        
cufflinks 5.624        
cufflinks 4.342        
cufflinks 4.514        
cufflinks 4.885        
cufflinks 2.237       Low
cufflinks 5.278        

0 Strain