Gene : Seita.1G089100 S. italica v2.2
Genomic Order:  891 Name:  ? Seita.1G089100
Secondary Identifier:  ? PAC:32697882
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G089100 0.5kb upstream 0.5kb upstream 3258 true scaffold_1: 7864919-7868176 Setaria italica
Seita.1G089100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7867677-7868176 Setaria italica
Seita.1G089100 0.5kb downstream 0.5kb downstream 3258 true scaffold_1: 7864419-7867676 Setaria italica
Seita.1G089100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7864419-7864918 Setaria italica
Seita.1G089100 1.0kb upstream 1.0kb upstream 3758 true scaffold_1: 7864919-7868676 Setaria italica
Seita.1G089100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7867677-7868676 Setaria italica
Seita.1G089100 1.0kb downstream 1.0kb downstream 3758 true scaffold_1: 7863919-7867676 Setaria italica
Seita.1G089100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7863919-7864918 Setaria italica
Seita.1G089100 2.0kb upstream 2.0kb upstream 4758 true scaffold_1: 7864919-7869676 Setaria italica
Seita.1G089100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7867677-7869676 Setaria italica
Seita.1G089100 2.0kb downstream 2.0kb downstream 4758 true scaffold_1: 7862919-7867676 Setaria italica
Seita.1G089100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7862919-7864918 Setaria italica
Seita.1G089100 5.0kb upstream 5.0kb upstream 7758 true scaffold_1: 7864919-7872676 Setaria italica
Seita.1G089100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7867677-7872676 Setaria italica
Seita.1G089100 5.0kb downstream 5.0kb downstream 7758 true scaffold_1: 7859919-7867676 Setaria italica
Seita.1G089100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7859919-7864918 Setaria italica
Seita.1G089100 10.0kb upstream 10.0kb upstream 12758 true scaffold_1: 7864919-7877676 Setaria italica
Seita.1G089100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7867677-7877676 Setaria italica
Seita.1G089100 10.0kb downstream 10.0kb downstream 12758 true scaffold_1: 7854919-7867676 Setaria italica
Seita.1G089100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7854919-7864918 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026252 5273 Angiosperm View MSA
122180883 5267 Panicoideae View MSA
124577065 5269 Grass View MSA
121296245 5274 Embryophyte View MSA
123334442 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.43        
cufflinks 0.594       High
cufflinks 0.107        
cufflinks 0.028     Low Low
cufflinks 0.038     Low Low
cufflinks 0.481        
cufflinks 0.165        
cufflinks 0.309        
cufflinks 0.205        
cufflinks 0.234     Low  
cufflinks 0.379        
cufflinks 0.309        
cufflinks 0.309        
cufflinks 0.204        
cufflinks 0.262        
cufflinks 0.246        
cufflinks 0.369        
cufflinks 0.274        
cufflinks 0.045     Low Low
cufflinks 0.293        

0 Strain