Gene : Seita.1G090900 S. italica v2.2
Defline:  (1 of 15) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  909
Name:  ? Seita.1G090900 Secondary Identifier:  ? PAC:32694802
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G090900 0.5kb upstream 0.5kb upstream 8456 true scaffold_1: 8013777-8022232 Setaria italica
Seita.1G090900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8013777-8014276 Setaria italica
Seita.1G090900 0.5kb downstream 0.5kb downstream 8456 true scaffold_1: 8014277-8022732 Setaria italica
Seita.1G090900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8022233-8022732 Setaria italica
Seita.1G090900 1.0kb upstream 1.0kb upstream 8956 true scaffold_1: 8013277-8022232 Setaria italica
Seita.1G090900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8013277-8014276 Setaria italica
Seita.1G090900 1.0kb downstream 1.0kb downstream 8956 true scaffold_1: 8014277-8023232 Setaria italica
Seita.1G090900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8022233-8023232 Setaria italica
Seita.1G090900 2.0kb upstream 2.0kb upstream 9956 true scaffold_1: 8012277-8022232 Setaria italica
Seita.1G090900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8012277-8014276 Setaria italica
Seita.1G090900 2.0kb downstream 2.0kb downstream 9956 true scaffold_1: 8014277-8024232 Setaria italica
Seita.1G090900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8022233-8024232 Setaria italica
Seita.1G090900 5.0kb upstream 5.0kb upstream 12956 true scaffold_1: 8009277-8022232 Setaria italica
Seita.1G090900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8009277-8014276 Setaria italica
Seita.1G090900 5.0kb downstream 5.0kb downstream 12956 true scaffold_1: 8014277-8027232 Setaria italica
Seita.1G090900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8022233-8027232 Setaria italica
Seita.1G090900 10.0kb upstream 10.0kb upstream 17956 true scaffold_1: 8004277-8022232 Setaria italica
Seita.1G090900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8004277-8014276 Setaria italica
Seita.1G090900 10.0kb downstream 10.0kb downstream 17956 true scaffold_1: 8014277-8032232 Setaria italica
Seita.1G090900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8022233-8032232 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197185 5267 Panicoideae View MSA
124574675 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.891     High  
cufflinks 14.702     High  
cufflinks 3.063       Low
cufflinks 2.535       Low
cufflinks 2.154       Low
cufflinks 18.931     High High
cufflinks 12.33        
cufflinks 11.706        
cufflinks 4.291        
cufflinks 5.632        
cufflinks 9.467        
cufflinks 15.555     High  
cufflinks 17.42     High  
cufflinks 3.929       Low
cufflinks 13.896        
cufflinks 22.227     High High
cufflinks 14.495     High  
cufflinks 14.207     High  
cufflinks 4.787        
cufflinks 12.807        

0 Strain