Gene : Seita.1G092400 S. italica v2.2
Defline:  (1 of 2) PTHR13009//PTHR13009:SF5 - HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 Genomic Order:  924
Name:  ? Seita.1G092400 Secondary Identifier:  ? PAC:32694025
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G092400 0.5kb upstream 0.5kb upstream 3684 true scaffold_1: 8150306-8153989 Setaria italica
Seita.1G092400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8150306-8150805 Setaria italica
Seita.1G092400 0.5kb downstream 0.5kb downstream 3684 true scaffold_1: 8150806-8154489 Setaria italica
Seita.1G092400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8153990-8154489 Setaria italica
Seita.1G092400 1.0kb upstream 1.0kb upstream 4184 true scaffold_1: 8149806-8153989 Setaria italica
Seita.1G092400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8149806-8150805 Setaria italica
Seita.1G092400 1.0kb downstream 1.0kb downstream 4184 true scaffold_1: 8150806-8154989 Setaria italica
Seita.1G092400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8153990-8154989 Setaria italica
Seita.1G092400 2.0kb upstream 2.0kb upstream 5184 true scaffold_1: 8148806-8153989 Setaria italica
Seita.1G092400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8148806-8150805 Setaria italica
Seita.1G092400 2.0kb downstream 2.0kb downstream 5184 true scaffold_1: 8150806-8155989 Setaria italica
Seita.1G092400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8153990-8155989 Setaria italica
Seita.1G092400 5.0kb upstream 5.0kb upstream 8184 true scaffold_1: 8145806-8153989 Setaria italica
Seita.1G092400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8145806-8150805 Setaria italica
Seita.1G092400 5.0kb downstream 5.0kb downstream 8184 true scaffold_1: 8150806-8158989 Setaria italica
Seita.1G092400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8153990-8158989 Setaria italica
Seita.1G092400 10.0kb upstream 10.0kb upstream 13184 true scaffold_1: 8140806-8153989 Setaria italica
Seita.1G092400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8140806-8150805 Setaria italica
Seita.1G092400 10.0kb downstream 10.0kb downstream 13184 true scaffold_1: 8150806-8163989 Setaria italica
Seita.1G092400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8153990-8163989 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186268 5267 Panicoideae View MSA
124571777 5269 Grass View MSA
122042378 5273 Angiosperm View MSA
121347282 5274 Embryophyte View MSA
123426157 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.325       High
cufflinks 6.447        
cufflinks 1.201       Low
cufflinks 1.979       Low
cufflinks 3.775        
cufflinks 5.187        
cufflinks 6.453        
cufflinks 4.747        
cufflinks 5.368        
cufflinks 13.139       High
cufflinks 5.468        
cufflinks 9.481       High
cufflinks 5.457        
cufflinks 5.04        
cufflinks 7.966        
cufflinks 4.755        
cufflinks 6.578        
cufflinks 7.185        
cufflinks 3.925        
cufflinks 7.058        

0 Strain