Gene : Seita.1G093400 S. italica v2.2
Defline:  (1 of 1) PF00569//PF02135//PF08214 - Zinc finger, ZZ type (ZZ) // TAZ zinc finger (zf-TAZ) // Histone acetylation protein (HAT_KAT11) Genomic Order:  934
Name:  ? Seita.1G093400 Secondary Identifier:  ? PAC:32693964
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G093400 0.5kb upstream 0.5kb upstream 12421 true scaffold_1: 8226085-8238505 Setaria italica
Seita.1G093400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8238006-8238505 Setaria italica
Seita.1G093400 0.5kb downstream 0.5kb downstream 12421 true scaffold_1: 8225585-8238005 Setaria italica
Seita.1G093400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8225585-8226084 Setaria italica
Seita.1G093400 1.0kb upstream 1.0kb upstream 12921 true scaffold_1: 8226085-8239005 Setaria italica
Seita.1G093400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8238006-8239005 Setaria italica
Seita.1G093400 1.0kb downstream 1.0kb downstream 12921 true scaffold_1: 8225085-8238005 Setaria italica
Seita.1G093400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8225085-8226084 Setaria italica
Seita.1G093400 2.0kb upstream 2.0kb upstream 13921 true scaffold_1: 8226085-8240005 Setaria italica
Seita.1G093400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8238006-8240005 Setaria italica
Seita.1G093400 2.0kb downstream 2.0kb downstream 13921 true scaffold_1: 8224085-8238005 Setaria italica
Seita.1G093400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8224085-8226084 Setaria italica
Seita.1G093400 5.0kb upstream 5.0kb upstream 16921 true scaffold_1: 8226085-8243005 Setaria italica
Seita.1G093400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8238006-8243005 Setaria italica
Seita.1G093400 5.0kb downstream 5.0kb downstream 16921 true scaffold_1: 8221085-8238005 Setaria italica
Seita.1G093400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8221085-8226084 Setaria italica
Seita.1G093400 10.0kb upstream 10.0kb upstream 21921 true scaffold_1: 8226085-8248005 Setaria italica
Seita.1G093400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8238006-8248005 Setaria italica
Seita.1G093400 10.0kb downstream 10.0kb downstream 21921 true scaffold_1: 8216085-8238005 Setaria italica
Seita.1G093400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8216085-8226084 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176651 5267 Panicoideae View MSA
124575390 5269 Grass View MSA
122047201 5273 Angiosperm View MSA
121350917 5274 Embryophyte View MSA
123426645 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.638     High  
cufflinks 23.911     High  
cufflinks 31.925     High High
cufflinks 27.362     High  
cufflinks 21.906     High  
cufflinks 22.581     High  
cufflinks 27.599     High  
cufflinks 14.362     High Low
cufflinks 20.263     High  
cufflinks 12.454       Low
cufflinks 23.898     High  
cufflinks 19.08     High  
cufflinks 24.056     High  
cufflinks 25.768     High  
cufflinks 26.62     High  
cufflinks 34.21     High High
cufflinks 15.67     High Low
cufflinks 39.758     High High
cufflinks 22.717     High  
cufflinks 18.481     High  

0 Strain