Gene : Seita.1G096600 S. italica v2.2
Defline:  (1 of 414) PF01535 - PPR repeat (PPR) Genomic Order:  966
Name:  ? Seita.1G096600 Secondary Identifier:  ? PAC:32696374
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G096600 0.5kb upstream 0.5kb upstream 10960 true scaffold_1: 8461809-8472768 Setaria italica
Seita.1G096600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8461809-8462308 Setaria italica
Seita.1G096600 0.5kb downstream 0.5kb downstream 10960 true scaffold_1: 8462309-8473268 Setaria italica
Seita.1G096600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8472769-8473268 Setaria italica
Seita.1G096600 1.0kb upstream 1.0kb upstream 11460 true scaffold_1: 8461309-8472768 Setaria italica
Seita.1G096600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8461309-8462308 Setaria italica
Seita.1G096600 1.0kb downstream 1.0kb downstream 11460 true scaffold_1: 8462309-8473768 Setaria italica
Seita.1G096600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8472769-8473768 Setaria italica
Seita.1G096600 2.0kb upstream 2.0kb upstream 12460 true scaffold_1: 8460309-8472768 Setaria italica
Seita.1G096600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8460309-8462308 Setaria italica
Seita.1G096600 2.0kb downstream 2.0kb downstream 12460 true scaffold_1: 8462309-8474768 Setaria italica
Seita.1G096600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8472769-8474768 Setaria italica
Seita.1G096600 5.0kb upstream 5.0kb upstream 15460 true scaffold_1: 8457309-8472768 Setaria italica
Seita.1G096600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8457309-8462308 Setaria italica
Seita.1G096600 5.0kb downstream 5.0kb downstream 15460 true scaffold_1: 8462309-8477768 Setaria italica
Seita.1G096600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8472769-8477768 Setaria italica
Seita.1G096600 10.0kb upstream 10.0kb upstream 20460 true scaffold_1: 8452309-8472768 Setaria italica
Seita.1G096600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8452309-8462308 Setaria italica
Seita.1G096600 10.0kb downstream 10.0kb downstream 20460 true scaffold_1: 8462309-8482768 Setaria italica
Seita.1G096600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8472769-8482768 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179951 5267 Panicoideae View MSA
124579395 5269 Grass View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.372        
cufflinks 3.509       High
cufflinks 2.542        
cufflinks 2.424        
cufflinks 2.286        
cufflinks 3.86       High
cufflinks 2.436        
cufflinks 2.63        
cufflinks 2.69        
cufflinks 1.79       Low
cufflinks 2.961        
cufflinks 3.761       High
cufflinks 2.636        
cufflinks 2.257        
cufflinks 2.903        
cufflinks 2.901        
cufflinks 3.855       High
cufflinks 2.718        
cufflinks 1.742       Low
cufflinks 3.583       High

0 Strain