Gene : Seita.1G095700 S. italica v2.2
Defline:  (1 of 2) 2.7.7.3 - Pantetheine-phosphate adenylyltransferase / PPAT Genomic Order:  957
Name:  ? Seita.1G095700 Secondary Identifier:  ? PAC:32696023
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica COA-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G095700 0.5kb upstream 0.5kb upstream 5614 true scaffold_1: 8404058-8409671 Setaria italica
Seita.1G095700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8409172-8409671 Setaria italica
Seita.1G095700 0.5kb downstream 0.5kb downstream 5614 true scaffold_1: 8403558-8409171 Setaria italica
Seita.1G095700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8403558-8404057 Setaria italica
Seita.1G095700 1.0kb upstream 1.0kb upstream 6114 true scaffold_1: 8404058-8410171 Setaria italica
Seita.1G095700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8409172-8410171 Setaria italica
Seita.1G095700 1.0kb downstream 1.0kb downstream 6114 true scaffold_1: 8403058-8409171 Setaria italica
Seita.1G095700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8403058-8404057 Setaria italica
Seita.1G095700 2.0kb upstream 2.0kb upstream 7114 true scaffold_1: 8404058-8411171 Setaria italica
Seita.1G095700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8409172-8411171 Setaria italica
Seita.1G095700 2.0kb downstream 2.0kb downstream 7114 true scaffold_1: 8402058-8409171 Setaria italica
Seita.1G095700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8402058-8404057 Setaria italica
Seita.1G095700 5.0kb upstream 5.0kb upstream 10114 true scaffold_1: 8404058-8414171 Setaria italica
Seita.1G095700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8409172-8414171 Setaria italica
Seita.1G095700 5.0kb downstream 5.0kb downstream 10114 true scaffold_1: 8399058-8409171 Setaria italica
Seita.1G095700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8399058-8404057 Setaria italica
Seita.1G095700 10.0kb upstream 10.0kb upstream 15114 true scaffold_1: 8404058-8419171 Setaria italica
Seita.1G095700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8409172-8419171 Setaria italica
Seita.1G095700 10.0kb downstream 10.0kb downstream 15114 true scaffold_1: 8394058-8409171 Setaria italica
Seita.1G095700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8394058-8404057 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178137 5267 Panicoideae View MSA
124580245 5269 Grass View MSA
122050871 5273 Angiosperm View MSA
121345308 5274 Embryophyte View MSA
123425957 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.803        
cufflinks 6.844       High
cufflinks 1.442       Low
cufflinks 1.548       Low
cufflinks 2.092        
cufflinks 6.807       High
cufflinks 3.917        
cufflinks 5.627       High
cufflinks 3.142        
cufflinks 3.001        
cufflinks 1.742       Low
cufflinks 4.149        
cufflinks 3.939        
cufflinks 2.263        
cufflinks 4.434        
cufflinks 2.707        
cufflinks 4.784        
cufflinks 1.582       Low
cufflinks 1.524       Low
cufflinks 4.18        

0 Strain