Gene : Seita.1G097800 S. italica v2.2
Genomic Order:  978 Name:  ? Seita.1G097800
Secondary Identifier:  ? PAC:32694412
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G097800 0.5kb upstream 0.5kb upstream 12256 true scaffold_1: 8533219-8545474 Setaria italica
Seita.1G097800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8533219-8533718 Setaria italica
Seita.1G097800 0.5kb downstream 0.5kb downstream 12256 true scaffold_1: 8533719-8545974 Setaria italica
Seita.1G097800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8545475-8545974 Setaria italica
Seita.1G097800 1.0kb upstream 1.0kb upstream 12756 true scaffold_1: 8532719-8545474 Setaria italica
Seita.1G097800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8532719-8533718 Setaria italica
Seita.1G097800 1.0kb downstream 1.0kb downstream 12756 true scaffold_1: 8533719-8546474 Setaria italica
Seita.1G097800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8545475-8546474 Setaria italica
Seita.1G097800 2.0kb upstream 2.0kb upstream 13756 true scaffold_1: 8531719-8545474 Setaria italica
Seita.1G097800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8531719-8533718 Setaria italica
Seita.1G097800 2.0kb downstream 2.0kb downstream 13756 true scaffold_1: 8533719-8547474 Setaria italica
Seita.1G097800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8545475-8547474 Setaria italica
Seita.1G097800 5.0kb upstream 5.0kb upstream 16756 true scaffold_1: 8528719-8545474 Setaria italica
Seita.1G097800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8528719-8533718 Setaria italica
Seita.1G097800 5.0kb downstream 5.0kb downstream 16756 true scaffold_1: 8533719-8550474 Setaria italica
Seita.1G097800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8545475-8550474 Setaria italica
Seita.1G097800 10.0kb upstream 10.0kb upstream 21756 true scaffold_1: 8523719-8545474 Setaria italica
Seita.1G097800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8523719-8533718 Setaria italica
Seita.1G097800 10.0kb downstream 10.0kb downstream 21756 true scaffold_1: 8533719-8555474 Setaria italica
Seita.1G097800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8545475-8555474 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196514 5267 Panicoideae View MSA
124588451 5269 Grass View MSA
122050278 5273 Angiosperm View MSA
121311837 5274 Embryophyte View MSA
123349078 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.547     High  
cufflinks 8.702       Low
cufflinks 161.285     High High
cufflinks 179.703     High High
cufflinks 71.931     High  
cufflinks 9.793       Low
cufflinks 63.606     High  
cufflinks 21.367     High  
cufflinks 18.591     High  
cufflinks 12.847       Low
cufflinks 43.638     High  
cufflinks 39.991     High  
cufflinks 87.971     High  
cufflinks 48.731     High  
cufflinks 52.853     High  
cufflinks 111.611     High  
cufflinks 25.344     High  
cufflinks 133.232     High High
cufflinks 149.063     High High
cufflinks 26.8     High  

0 Strain