Gene : Seita.1G100900 S. italica v2.2
Defline:  (1 of 1) PTHR11937:SF47 - ACTIN-RELATED PROTEIN 6 Genomic Order:  1009
Name:  ? Seita.1G100900 Secondary Identifier:  ? PAC:32694775
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G100900 0.5kb upstream 0.5kb upstream 4365 true scaffold_1: 8778606-8782970 Setaria italica
Seita.1G100900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8782471-8782970 Setaria italica
Seita.1G100900 0.5kb downstream 0.5kb downstream 4365 true scaffold_1: 8778106-8782470 Setaria italica
Seita.1G100900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8778106-8778605 Setaria italica
Seita.1G100900 1.0kb upstream 1.0kb upstream 4865 true scaffold_1: 8778606-8783470 Setaria italica
Seita.1G100900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8782471-8783470 Setaria italica
Seita.1G100900 1.0kb downstream 1.0kb downstream 4865 true scaffold_1: 8777606-8782470 Setaria italica
Seita.1G100900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8777606-8778605 Setaria italica
Seita.1G100900 2.0kb upstream 2.0kb upstream 5865 true scaffold_1: 8778606-8784470 Setaria italica
Seita.1G100900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8782471-8784470 Setaria italica
Seita.1G100900 2.0kb downstream 2.0kb downstream 5865 true scaffold_1: 8776606-8782470 Setaria italica
Seita.1G100900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8776606-8778605 Setaria italica
Seita.1G100900 5.0kb upstream 5.0kb upstream 8865 true scaffold_1: 8778606-8787470 Setaria italica
Seita.1G100900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8782471-8787470 Setaria italica
Seita.1G100900 5.0kb downstream 5.0kb downstream 8865 true scaffold_1: 8773606-8782470 Setaria italica
Seita.1G100900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8773606-8778605 Setaria italica
Seita.1G100900 10.0kb upstream 10.0kb upstream 13865 true scaffold_1: 8778606-8792470 Setaria italica
Seita.1G100900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8782471-8792470 Setaria italica
Seita.1G100900 10.0kb downstream 10.0kb downstream 13865 true scaffold_1: 8768606-8782470 Setaria italica
Seita.1G100900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8768606-8778605 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177706 5267 Panicoideae View MSA
124568306 5269 Grass View MSA
122044140 5273 Angiosperm View MSA
121346447 5274 Embryophyte View MSA
123426256 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.569        
cufflinks 0.96        
cufflinks 0.643        
cufflinks 0.402       Low
cufflinks 0.397       Low
cufflinks 0.837        
cufflinks 0.572        
cufflinks 0.859        
cufflinks 0.522        
cufflinks 0.711        
cufflinks 0.747        
cufflinks 0.861        
cufflinks 0.886        
cufflinks 0.959        
cufflinks 1.151       High
cufflinks 0.45       Low
cufflinks 1.098       High
cufflinks 0.39       Low
cufflinks 0.611        
cufflinks 1.052       High

0 Strain