Gene : Seita.1G101800 S. italica v2.2
Defline:  (1 of 2) PTHR21094 - GOS-28 SNARE- RELATED Genomic Order:  1018
Name:  ? Seita.1G101800 Secondary Identifier:  ? PAC:32697689
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G101800 0.5kb upstream 0.5kb upstream 2483 true scaffold_1: 8832681-8835163 Setaria italica
Seita.1G101800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8834664-8835163 Setaria italica
Seita.1G101800 0.5kb downstream 0.5kb downstream 2483 true scaffold_1: 8832181-8834663 Setaria italica
Seita.1G101800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8832181-8832680 Setaria italica
Seita.1G101800 1.0kb upstream 1.0kb upstream 2983 true scaffold_1: 8832681-8835663 Setaria italica
Seita.1G101800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8834664-8835663 Setaria italica
Seita.1G101800 1.0kb downstream 1.0kb downstream 2983 true scaffold_1: 8831681-8834663 Setaria italica
Seita.1G101800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8831681-8832680 Setaria italica
Seita.1G101800 2.0kb upstream 2.0kb upstream 3983 true scaffold_1: 8832681-8836663 Setaria italica
Seita.1G101800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8834664-8836663 Setaria italica
Seita.1G101800 2.0kb downstream 2.0kb downstream 3983 true scaffold_1: 8830681-8834663 Setaria italica
Seita.1G101800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8830681-8832680 Setaria italica
Seita.1G101800 5.0kb upstream 5.0kb upstream 6983 true scaffold_1: 8832681-8839663 Setaria italica
Seita.1G101800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8834664-8839663 Setaria italica
Seita.1G101800 5.0kb downstream 5.0kb downstream 6983 true scaffold_1: 8827681-8834663 Setaria italica
Seita.1G101800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8827681-8832680 Setaria italica
Seita.1G101800 10.0kb upstream 10.0kb upstream 11983 true scaffold_1: 8832681-8844663 Setaria italica
Seita.1G101800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8834664-8844663 Setaria italica
Seita.1G101800 10.0kb downstream 10.0kb downstream 11983 true scaffold_1: 8822681-8834663 Setaria italica
Seita.1G101800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8822681-8832680 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188657 5267 Panicoideae View MSA
124571575 5269 Grass View MSA
122046989 5273 Angiosperm View MSA
121345350 5274 Embryophyte View MSA
123427960 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.995        
cufflinks 8.269        
cufflinks 4.059       Low
cufflinks 3.787       Low
cufflinks 3.689       Low
cufflinks 8.671        
cufflinks 6.09        
cufflinks 7.179        
cufflinks 3.984       Low
cufflinks 12.436       High
cufflinks 6.528        
cufflinks 6.134        
cufflinks 6.268        
cufflinks 5.602        
cufflinks 9.473       High
cufflinks 3.909       Low
cufflinks 8.716       High
cufflinks 3.565       Low
cufflinks 4.684        
cufflinks 8.415        

0 Strain