Gene : Seita.1G099400 S. italica v2.2
Defline:  (1 of 1) PTHR15495//PTHR15495:SF17 - NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED Genomic Order:  994
Name:  ? Seita.1G099400 Secondary Identifier:  ? PAC:32696653
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G099400 0.5kb upstream 0.5kb upstream 3245 true scaffold_1: 8657903-8661147 Setaria italica
Seita.1G099400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8660648-8661147 Setaria italica
Seita.1G099400 0.5kb downstream 0.5kb downstream 3245 true scaffold_1: 8657403-8660647 Setaria italica
Seita.1G099400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8657403-8657902 Setaria italica
Seita.1G099400 1.0kb upstream 1.0kb upstream 3745 true scaffold_1: 8657903-8661647 Setaria italica
Seita.1G099400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8660648-8661647 Setaria italica
Seita.1G099400 1.0kb downstream 1.0kb downstream 3745 true scaffold_1: 8656903-8660647 Setaria italica
Seita.1G099400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8656903-8657902 Setaria italica
Seita.1G099400 2.0kb upstream 2.0kb upstream 4745 true scaffold_1: 8657903-8662647 Setaria italica
Seita.1G099400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8660648-8662647 Setaria italica
Seita.1G099400 2.0kb downstream 2.0kb downstream 4745 true scaffold_1: 8655903-8660647 Setaria italica
Seita.1G099400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8655903-8657902 Setaria italica
Seita.1G099400 5.0kb upstream 5.0kb upstream 7745 true scaffold_1: 8657903-8665647 Setaria italica
Seita.1G099400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8660648-8665647 Setaria italica
Seita.1G099400 5.0kb downstream 5.0kb downstream 7745 true scaffold_1: 8652903-8660647 Setaria italica
Seita.1G099400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8652903-8657902 Setaria italica
Seita.1G099400 10.0kb upstream 10.0kb upstream 12745 true scaffold_1: 8657903-8670647 Setaria italica
Seita.1G099400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8660648-8670647 Setaria italica
Seita.1G099400 10.0kb downstream 10.0kb downstream 12745 true scaffold_1: 8647903-8660647 Setaria italica
Seita.1G099400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8647903-8657902 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180149 5267 Panicoideae View MSA
124574918 5269 Grass View MSA
122045656 5273 Angiosperm View MSA
121347339 5274 Embryophyte View MSA
123426841 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.623        
cufflinks 5.893        
cufflinks 7.094        
cufflinks 7.362        
cufflinks 11.584     High  
cufflinks 6.747        
cufflinks 14.864     High High
cufflinks 12.755        
cufflinks 11.625        
cufflinks 2.614        
cufflinks 2.786        
cufflinks 0.351       Low
cufflinks 0.576       Low
cufflinks 6.05        
cufflinks 0.326       Low
cufflinks 23.143     High High
cufflinks 0.516       Low
cufflinks 3.764        
cufflinks 10.13        
cufflinks 0.499       Low

0 Strain