Gene : Seita.1G107400 S. italica v2.2
Defline:  (1 of 2) PF13301 - Protein of unknown function (DUF4079) (DUF4079) Genomic Order:  1074
Name:  ? Seita.1G107400 Secondary Identifier:  ? PAC:32694735
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G107400 0.5kb upstream 0.5kb upstream 1915 true scaffold_1: 9298956-9300870 Setaria italica
Seita.1G107400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9298956-9299455 Setaria italica
Seita.1G107400 0.5kb downstream 0.5kb downstream 1915 true scaffold_1: 9299456-9301370 Setaria italica
Seita.1G107400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9300871-9301370 Setaria italica
Seita.1G107400 1.0kb upstream 1.0kb upstream 2415 true scaffold_1: 9298456-9300870 Setaria italica
Seita.1G107400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9298456-9299455 Setaria italica
Seita.1G107400 1.0kb downstream 1.0kb downstream 2415 true scaffold_1: 9299456-9301870 Setaria italica
Seita.1G107400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9300871-9301870 Setaria italica
Seita.1G107400 2.0kb upstream 2.0kb upstream 3415 true scaffold_1: 9297456-9300870 Setaria italica
Seita.1G107400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9297456-9299455 Setaria italica
Seita.1G107400 2.0kb downstream 2.0kb downstream 3415 true scaffold_1: 9299456-9302870 Setaria italica
Seita.1G107400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9300871-9302870 Setaria italica
Seita.1G107400 5.0kb upstream 5.0kb upstream 6415 true scaffold_1: 9294456-9300870 Setaria italica
Seita.1G107400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9294456-9299455 Setaria italica
Seita.1G107400 5.0kb downstream 5.0kb downstream 6415 true scaffold_1: 9299456-9305870 Setaria italica
Seita.1G107400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9300871-9305870 Setaria italica
Seita.1G107400 10.0kb upstream 10.0kb upstream 11415 true scaffold_1: 9289456-9300870 Setaria italica
Seita.1G107400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9289456-9299455 Setaria italica
Seita.1G107400 10.0kb downstream 10.0kb downstream 11415 true scaffold_1: 9299456-9310870 Setaria italica
Seita.1G107400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9300871-9310870 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191263 5267 Panicoideae View MSA
124573009 5269 Grass View MSA
122046542 5273 Angiosperm View MSA
121345670 5274 Embryophyte View MSA
123424562 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.463        
cufflinks 4.413        
cufflinks 4.298        
cufflinks 7.955        
cufflinks 25.339     High  
cufflinks 4.235        
cufflinks 12.968        
cufflinks 41.294     High High
cufflinks 23.184     High  
cufflinks 12.08        
cufflinks 2.993        
cufflinks 0.023     Low Low
cufflinks 0.355        
cufflinks 8.64        
cufflinks 0.07     Low Low
cufflinks 14.737     High  
cufflinks 0.049     Low Low
cufflinks 4.75        
cufflinks 24.408     High  
cufflinks 0.048     Low Low

0 Strain