Gene : Seita.1G110600 S. italica v2.2
Defline:  (1 of 414) PF01535 - PPR repeat (PPR) Genomic Order:  1106
Name:  ? Seita.1G110600 Secondary Identifier:  ? PAC:32695160
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G110600 0.5kb upstream 0.5kb upstream 2635 true scaffold_1: 9682853-9685487 Setaria italica
Seita.1G110600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9682853-9683352 Setaria italica
Seita.1G110600 0.5kb downstream 0.5kb downstream 2635 true scaffold_1: 9683353-9685987 Setaria italica
Seita.1G110600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9685488-9685987 Setaria italica
Seita.1G110600 1.0kb upstream 1.0kb upstream 3135 true scaffold_1: 9682353-9685487 Setaria italica
Seita.1G110600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9682353-9683352 Setaria italica
Seita.1G110600 1.0kb downstream 1.0kb downstream 3135 true scaffold_1: 9683353-9686487 Setaria italica
Seita.1G110600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9685488-9686487 Setaria italica
Seita.1G110600 2.0kb upstream 2.0kb upstream 4135 true scaffold_1: 9681353-9685487 Setaria italica
Seita.1G110600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9681353-9683352 Setaria italica
Seita.1G110600 2.0kb downstream 2.0kb downstream 4135 true scaffold_1: 9683353-9687487 Setaria italica
Seita.1G110600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9685488-9687487 Setaria italica
Seita.1G110600 5.0kb upstream 5.0kb upstream 7135 true scaffold_1: 9678353-9685487 Setaria italica
Seita.1G110600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9678353-9683352 Setaria italica
Seita.1G110600 5.0kb downstream 5.0kb downstream 7135 true scaffold_1: 9683353-9690487 Setaria italica
Seita.1G110600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9685488-9690487 Setaria italica
Seita.1G110600 10.0kb upstream 10.0kb upstream 12135 true scaffold_1: 9673353-9685487 Setaria italica
Seita.1G110600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9673353-9683352 Setaria italica
Seita.1G110600 10.0kb downstream 10.0kb downstream 12135 true scaffold_1: 9683353-9695487 Setaria italica
Seita.1G110600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9685488-9695487 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177742 5267 Panicoideae View MSA
124575269 5269 Grass View MSA
122047687 5273 Angiosperm View MSA
121347538 5274 Embryophyte View MSA
123380566 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.474        
cufflinks 4.231        
cufflinks 7.92        
cufflinks 6.223        
cufflinks 11.865     High High
cufflinks 4.092        
cufflinks 10.146        
cufflinks 6.601        
cufflinks 17.899     High High
cufflinks 3.322        
cufflinks 4.817        
cufflinks 7.672        
cufflinks 2.292        
cufflinks 4.964        
cufflinks 0.426       Low
cufflinks 10.913        
cufflinks 1.042       Low
cufflinks 10.053        
cufflinks 3.072        
cufflinks 0.809       Low

0 Strain