Gene : Seita.1G111400 S. italica v2.2
Defline:  (1 of 1) PTHR11705 - PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B Genomic Order:  1114
Name:  ? Seita.1G111400 Secondary Identifier:  ? PAC:32698193
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G111400 0.5kb upstream 0.5kb upstream 5676 true scaffold_1: 9740440-9746115 Setaria italica
Seita.1G111400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9745616-9746115 Setaria italica
Seita.1G111400 0.5kb downstream 0.5kb downstream 5676 true scaffold_1: 9739940-9745615 Setaria italica
Seita.1G111400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9739940-9740439 Setaria italica
Seita.1G111400 1.0kb upstream 1.0kb upstream 6176 true scaffold_1: 9740440-9746615 Setaria italica
Seita.1G111400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9745616-9746615 Setaria italica
Seita.1G111400 1.0kb downstream 1.0kb downstream 6176 true scaffold_1: 9739440-9745615 Setaria italica
Seita.1G111400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9739440-9740439 Setaria italica
Seita.1G111400 2.0kb upstream 2.0kb upstream 7176 true scaffold_1: 9740440-9747615 Setaria italica
Seita.1G111400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9745616-9747615 Setaria italica
Seita.1G111400 2.0kb downstream 2.0kb downstream 7176 true scaffold_1: 9738440-9745615 Setaria italica
Seita.1G111400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9738440-9740439 Setaria italica
Seita.1G111400 5.0kb upstream 5.0kb upstream 10176 true scaffold_1: 9740440-9750615 Setaria italica
Seita.1G111400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9745616-9750615 Setaria italica
Seita.1G111400 5.0kb downstream 5.0kb downstream 10176 true scaffold_1: 9735440-9745615 Setaria italica
Seita.1G111400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9735440-9740439 Setaria italica
Seita.1G111400 10.0kb upstream 10.0kb upstream 15176 true scaffold_1: 9740440-9755615 Setaria italica
Seita.1G111400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9745616-9755615 Setaria italica
Seita.1G111400 10.0kb downstream 10.0kb downstream 15176 true scaffold_1: 9730440-9745615 Setaria italica
Seita.1G111400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9730440-9740439 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181212 5267 Panicoideae View MSA
124571997 5269 Grass View MSA
122042944 5273 Angiosperm View MSA
121350771 5274 Embryophyte View MSA
123426036 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.576       High
cufflinks 6.542        
cufflinks 3.044       Low
cufflinks 3.138       Low
cufflinks 2.958       Low
cufflinks 5.824        
cufflinks 4.873        
cufflinks 5.217        
cufflinks 4.046        
cufflinks 5.374        
cufflinks 7.077       High
cufflinks 6.382        
cufflinks 6.787        
cufflinks 2.914       Low
cufflinks 6.519        
cufflinks 5.299        
cufflinks 7.01        
cufflinks 5.582        
cufflinks 3.041       Low
cufflinks 6.521        

0 Strain