Gene : Seita.1G112600 S. italica v2.2
Defline:  (1 of 2) PTHR11079:SF58 - RNA PSEUDOURIDINE SYNTHASE 4, MITOCHONDRIAL Genomic Order:  1126
Name:  ? Seita.1G112600 Secondary Identifier:  ? PAC:32697444
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G112600 0.5kb upstream 0.5kb upstream 8585 true scaffold_1: 9852165-9860749 Setaria italica
Seita.1G112600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9860250-9860749 Setaria italica
Seita.1G112600 0.5kb downstream 0.5kb downstream 8585 true scaffold_1: 9851665-9860249 Setaria italica
Seita.1G112600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9851665-9852164 Setaria italica
Seita.1G112600 1.0kb upstream 1.0kb upstream 9085 true scaffold_1: 9852165-9861249 Setaria italica
Seita.1G112600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9860250-9861249 Setaria italica
Seita.1G112600 1.0kb downstream 1.0kb downstream 9085 true scaffold_1: 9851165-9860249 Setaria italica
Seita.1G112600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9851165-9852164 Setaria italica
Seita.1G112600 2.0kb upstream 2.0kb upstream 10085 true scaffold_1: 9852165-9862249 Setaria italica
Seita.1G112600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9860250-9862249 Setaria italica
Seita.1G112600 2.0kb downstream 2.0kb downstream 10085 true scaffold_1: 9850165-9860249 Setaria italica
Seita.1G112600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9850165-9852164 Setaria italica
Seita.1G112600 5.0kb upstream 5.0kb upstream 13085 true scaffold_1: 9852165-9865249 Setaria italica
Seita.1G112600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9860250-9865249 Setaria italica
Seita.1G112600 5.0kb downstream 5.0kb downstream 13085 true scaffold_1: 9847165-9860249 Setaria italica
Seita.1G112600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9847165-9852164 Setaria italica
Seita.1G112600 10.0kb upstream 10.0kb upstream 18085 true scaffold_1: 9852165-9870249 Setaria italica
Seita.1G112600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9860250-9870249 Setaria italica
Seita.1G112600 10.0kb downstream 10.0kb downstream 18085 true scaffold_1: 9842165-9860249 Setaria italica
Seita.1G112600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9842165-9852164 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122052542 5267 Panicoideae Singleton cluster - no MSA
124352467 5269 Grass Singleton cluster - no MSA
122044884 5273 Angiosperm View MSA
121348863 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low  
cufflinks 0.014     Low  
cufflinks 0.009     Low  
cufflinks 0.006     Low  
cufflinks 0.013     Low  
cufflinks 0.014     Low  
cufflinks 0.012     Low  
cufflinks 0.016     Low  
cufflinks 0.025     Low  
cufflinks 0.261     Low High
cufflinks 0.013     Low  
cufflinks 0.01     Low  
cufflinks 0.003     Low Low
cufflinks 0.013     Low  
cufflinks 0.011     Low  
cufflinks 0.007     Low  
cufflinks 0.01     Low  
cufflinks 0.008     Low  
cufflinks 0.001     Low Low
cufflinks 0.014     Low  

0 Strain