Gene : Seita.1G112300 S. italica v2.2
Defline:  (1 of 1) PTHR13040 - AUTOPHAGY PROTEIN 5 Genomic Order:  1123
Name:  ? Seita.1G112300 Secondary Identifier:  ? PAC:32694437
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G112300 0.5kb upstream 0.5kb upstream 4286 true scaffold_1: 9837977-9842262 Setaria italica
Seita.1G112300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9837977-9838476 Setaria italica
Seita.1G112300 0.5kb downstream 0.5kb downstream 4286 true scaffold_1: 9838477-9842762 Setaria italica
Seita.1G112300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9842263-9842762 Setaria italica
Seita.1G112300 1.0kb upstream 1.0kb upstream 4786 true scaffold_1: 9837477-9842262 Setaria italica
Seita.1G112300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9837477-9838476 Setaria italica
Seita.1G112300 1.0kb downstream 1.0kb downstream 4786 true scaffold_1: 9838477-9843262 Setaria italica
Seita.1G112300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9842263-9843262 Setaria italica
Seita.1G112300 2.0kb upstream 2.0kb upstream 5786 true scaffold_1: 9836477-9842262 Setaria italica
Seita.1G112300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9836477-9838476 Setaria italica
Seita.1G112300 2.0kb downstream 2.0kb downstream 5786 true scaffold_1: 9838477-9844262 Setaria italica
Seita.1G112300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9842263-9844262 Setaria italica
Seita.1G112300 5.0kb upstream 5.0kb upstream 8786 true scaffold_1: 9833477-9842262 Setaria italica
Seita.1G112300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9833477-9838476 Setaria italica
Seita.1G112300 5.0kb downstream 5.0kb downstream 8786 true scaffold_1: 9838477-9847262 Setaria italica
Seita.1G112300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9842263-9847262 Setaria italica
Seita.1G112300 10.0kb upstream 10.0kb upstream 13786 true scaffold_1: 9828477-9842262 Setaria italica
Seita.1G112300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9828477-9838476 Setaria italica
Seita.1G112300 10.0kb downstream 10.0kb downstream 13786 true scaffold_1: 9838477-9852262 Setaria italica
Seita.1G112300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9842263-9852262 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191115 5267 Panicoideae View MSA
124569807 5269 Grass View MSA
122043492 5273 Angiosperm View MSA
121349357 5274 Embryophyte View MSA
123424338 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.938        
cufflinks 2.368        
cufflinks 1.376        
cufflinks 1.356       Low
cufflinks 1.01       Low
cufflinks 2.464        
cufflinks 1.726        
cufflinks 2.168        
cufflinks 1.236       Low
cufflinks 2.519       High
cufflinks 1.689        
cufflinks 2.804       High
cufflinks 2.387        
cufflinks 1.59        
cufflinks 1.994        
cufflinks 1.647        
cufflinks 2.399        
cufflinks 2.393        
cufflinks 1.135       Low
cufflinks 2.266        

0 Strain