Gene : Seita.1G116600 S. italica v2.2
Defline:  (1 of 63) PF00892 - EamA-like transporter family (EamA) Genomic Order:  1166
Name:  ? Seita.1G116600 Secondary Identifier:  ? PAC:32693846
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G116600 0.5kb upstream 0.5kb upstream 7003 true scaffold_1: 10159759-10166761 Setaria italica
Seita.1G116600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10159759-10160258 Setaria italica
Seita.1G116600 0.5kb downstream 0.5kb downstream 7003 true scaffold_1: 10160259-10167261 Setaria italica
Seita.1G116600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10166762-10167261 Setaria italica
Seita.1G116600 1.0kb upstream 1.0kb upstream 7503 true scaffold_1: 10159259-10166761 Setaria italica
Seita.1G116600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10159259-10160258 Setaria italica
Seita.1G116600 1.0kb downstream 1.0kb downstream 7503 true scaffold_1: 10160259-10167761 Setaria italica
Seita.1G116600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10166762-10167761 Setaria italica
Seita.1G116600 2.0kb upstream 2.0kb upstream 8503 true scaffold_1: 10158259-10166761 Setaria italica
Seita.1G116600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10158259-10160258 Setaria italica
Seita.1G116600 2.0kb downstream 2.0kb downstream 8503 true scaffold_1: 10160259-10168761 Setaria italica
Seita.1G116600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10166762-10168761 Setaria italica
Seita.1G116600 5.0kb upstream 5.0kb upstream 11503 true scaffold_1: 10155259-10166761 Setaria italica
Seita.1G116600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10155259-10160258 Setaria italica
Seita.1G116600 5.0kb downstream 5.0kb downstream 11503 true scaffold_1: 10160259-10171761 Setaria italica
Seita.1G116600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10166762-10171761 Setaria italica
Seita.1G116600 10.0kb upstream 10.0kb upstream 16503 true scaffold_1: 10150259-10166761 Setaria italica
Seita.1G116600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10150259-10160258 Setaria italica
Seita.1G116600 10.0kb downstream 10.0kb downstream 16503 true scaffold_1: 10160259-10176761 Setaria italica
Seita.1G116600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10166762-10176761 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026670 5273 Angiosperm View MSA
122196245 5267 Panicoideae View MSA
124586908 5269 Grass View MSA
121296466 5274 Embryophyte View MSA
123334621 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.446        
cufflinks 0.055     Low Low
cufflinks 3.022        
cufflinks 3.514        
cufflinks 1.728        
cufflinks 0.166        
cufflinks 0.161        
cufflinks 0.632        
cufflinks 0.508        
cufflinks 0.432        
cufflinks 1.238        
cufflinks 12.18       High
cufflinks 0.214        
cufflinks 1.11        
cufflinks 0.025     Low Low
cufflinks 0.254        
cufflinks 2.34        
cufflinks 1.272        
cufflinks 1.383        
cufflinks 5.588       High

0 Strain