Gene : Seita.1G117000 S. italica v2.2
Defline:  (1 of 1) PTHR10641//PTHR10641:SF590 - MYB-LIKE DNA-BINDING PROTEIN MYB Genomic Order:  1170
Name:  ? Seita.1G117000 Secondary Identifier:  ? PAC:32695701
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G117000 0.5kb upstream 0.5kb upstream 2362 true scaffold_1: 10216659-10219020 Setaria italica
Seita.1G117000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10218521-10219020 Setaria italica
Seita.1G117000 0.5kb downstream 0.5kb downstream 2362 true scaffold_1: 10216159-10218520 Setaria italica
Seita.1G117000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10216159-10216658 Setaria italica
Seita.1G117000 1.0kb upstream 1.0kb upstream 2862 true scaffold_1: 10216659-10219520 Setaria italica
Seita.1G117000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10218521-10219520 Setaria italica
Seita.1G117000 1.0kb downstream 1.0kb downstream 2862 true scaffold_1: 10215659-10218520 Setaria italica
Seita.1G117000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10215659-10216658 Setaria italica
Seita.1G117000 2.0kb upstream 2.0kb upstream 3862 true scaffold_1: 10216659-10220520 Setaria italica
Seita.1G117000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10218521-10220520 Setaria italica
Seita.1G117000 2.0kb downstream 2.0kb downstream 3862 true scaffold_1: 10214659-10218520 Setaria italica
Seita.1G117000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10214659-10216658 Setaria italica
Seita.1G117000 5.0kb upstream 5.0kb upstream 6862 true scaffold_1: 10216659-10223520 Setaria italica
Seita.1G117000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10218521-10223520 Setaria italica
Seita.1G117000 5.0kb downstream 5.0kb downstream 6862 true scaffold_1: 10211659-10218520 Setaria italica
Seita.1G117000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10211659-10216658 Setaria italica
Seita.1G117000 10.0kb upstream 10.0kb upstream 11862 true scaffold_1: 10216659-10228520 Setaria italica
Seita.1G117000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10218521-10228520 Setaria italica
Seita.1G117000 10.0kb downstream 10.0kb downstream 11862 true scaffold_1: 10206659-10218520 Setaria italica
Seita.1G117000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10206659-10216658 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183672 5267 Panicoideae View MSA
124579340 5269 Grass View MSA
122049039 5273 Angiosperm View MSA
121311219 5274 Embryophyte View MSA
123348543 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.502        
cufflinks 0.136        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  
cufflinks 0.048     Low  
cufflinks 0.118     Low  
cufflinks 0.102     Low  
cufflinks 0.127     Low  
cufflinks 0.062     Low  
cufflinks 3.791        
cufflinks 1.361        
cufflinks 5.991       High
cufflinks 6.811       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 17.242     High High
cufflinks 0.011     Low Low
cufflinks 16.221     High High
cufflinks 0.009     Low Low
cufflinks 0.01     Low Low
cufflinks 18.638     High High

0 Strain