Gene : Seita.1G117900 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1179
Name:  ? Seita.1G117900 Secondary Identifier:  ? PAC:32695961
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G117900 0.5kb upstream 0.5kb upstream 2009 true scaffold_1: 10258010-10260018 Setaria italica
Seita.1G117900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10259519-10260018 Setaria italica
Seita.1G117900 0.5kb downstream 0.5kb downstream 2009 true scaffold_1: 10257510-10259518 Setaria italica
Seita.1G117900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10257510-10258009 Setaria italica
Seita.1G117900 1.0kb upstream 1.0kb upstream 2509 true scaffold_1: 10258010-10260518 Setaria italica
Seita.1G117900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10259519-10260518 Setaria italica
Seita.1G117900 1.0kb downstream 1.0kb downstream 2509 true scaffold_1: 10257010-10259518 Setaria italica
Seita.1G117900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10257010-10258009 Setaria italica
Seita.1G117900 2.0kb upstream 2.0kb upstream 3509 true scaffold_1: 10258010-10261518 Setaria italica
Seita.1G117900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10259519-10261518 Setaria italica
Seita.1G117900 2.0kb downstream 2.0kb downstream 3509 true scaffold_1: 10256010-10259518 Setaria italica
Seita.1G117900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10256010-10258009 Setaria italica
Seita.1G117900 5.0kb upstream 5.0kb upstream 6509 true scaffold_1: 10258010-10264518 Setaria italica
Seita.1G117900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10259519-10264518 Setaria italica
Seita.1G117900 5.0kb downstream 5.0kb downstream 6509 true scaffold_1: 10253010-10259518 Setaria italica
Seita.1G117900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10253010-10258009 Setaria italica
Seita.1G117900 10.0kb upstream 10.0kb upstream 11509 true scaffold_1: 10258010-10269518 Setaria italica
Seita.1G117900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10259519-10269518 Setaria italica
Seita.1G117900 10.0kb downstream 10.0kb downstream 11509 true scaffold_1: 10248010-10259518 Setaria italica
Seita.1G117900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10248010-10258009 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029261 5273 Angiosperm View MSA
122115997 5267 Panicoideae View MSA
124587623 5269 Grass View MSA
121298616 5274 Embryophyte View MSA
123336578 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.013        
cufflinks 3.333       High
cufflinks 2.057        
cufflinks 1.096       Low
cufflinks 1.446        
cufflinks 3.379       High
cufflinks 1.496        
cufflinks 1.462        
cufflinks 2.951       High
cufflinks 1.437        
cufflinks 2.356        
cufflinks 2.082        
cufflinks 1.334        
cufflinks 2.622       High
cufflinks 1.677        
cufflinks 1.175        
cufflinks 1.26        
cufflinks 0.657       Low
cufflinks 1.725        
cufflinks 1.864        

0 Strain