Gene : Seita.1G202600 S. italica v2.2
Defline:  (1 of 1) PTHR11214:SF74 - BETA-1,3-GALACTOSYLTRANSFERASE 7-RELATED Genomic Order:  2026
Name:  ? Seita.1G202600 Secondary Identifier:  ? PAC:32698022
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G202600 0.5kb upstream 0.5kb upstream 5583 true scaffold_1: 28244075-28249657 Setaria italica
Seita.1G202600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28249158-28249657 Setaria italica
Seita.1G202600 0.5kb downstream 0.5kb downstream 5583 true scaffold_1: 28243575-28249157 Setaria italica
Seita.1G202600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28243575-28244074 Setaria italica
Seita.1G202600 1.0kb upstream 1.0kb upstream 6083 true scaffold_1: 28244075-28250157 Setaria italica
Seita.1G202600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28249158-28250157 Setaria italica
Seita.1G202600 1.0kb downstream 1.0kb downstream 6083 true scaffold_1: 28243075-28249157 Setaria italica
Seita.1G202600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28243075-28244074 Setaria italica
Seita.1G202600 2.0kb upstream 2.0kb upstream 7083 true scaffold_1: 28244075-28251157 Setaria italica
Seita.1G202600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28249158-28251157 Setaria italica
Seita.1G202600 2.0kb downstream 2.0kb downstream 7083 true scaffold_1: 28242075-28249157 Setaria italica
Seita.1G202600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28242075-28244074 Setaria italica
Seita.1G202600 5.0kb upstream 5.0kb upstream 10083 true scaffold_1: 28244075-28254157 Setaria italica
Seita.1G202600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28249158-28254157 Setaria italica
Seita.1G202600 5.0kb downstream 5.0kb downstream 10083 true scaffold_1: 28239075-28249157 Setaria italica
Seita.1G202600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28239075-28244074 Setaria italica
Seita.1G202600 10.0kb upstream 10.0kb upstream 15083 true scaffold_1: 28244075-28259157 Setaria italica
Seita.1G202600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28249158-28259157 Setaria italica
Seita.1G202600 10.0kb downstream 10.0kb downstream 15083 true scaffold_1: 28234075-28249157 Setaria italica
Seita.1G202600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28234075-28244074 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175372 5267 Panicoideae View MSA
124573382 5269 Grass View MSA
122048102 5273 Angiosperm View MSA
121348547 5274 Embryophyte View MSA
123427932 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.379     High  
cufflinks 14.847     High  
cufflinks 1.687       Low
cufflinks 2.15       Low
cufflinks 3.587       Low
cufflinks 15.906     High  
cufflinks 11.68        
cufflinks 8.88        
cufflinks 10.948        
cufflinks 10.43        
cufflinks 13.143        
cufflinks 21.187     High High
cufflinks 18.786     High  
cufflinks 9.828        
cufflinks 14.744     High  
cufflinks 6.33        
cufflinks 16.232     High  
cufflinks 15.165     High  
cufflinks 6.489        
cufflinks 14.652     High  

0 Strain