Gene : Seita.1G205700 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2057
Name:  ? Seita.1G205700 Secondary Identifier:  ? PAC:32695882
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G205700 0.5kb upstream 0.5kb upstream 2144 true scaffold_1: 28496397-28498540 Setaria italica
Seita.1G205700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28496397-28496896 Setaria italica
Seita.1G205700 0.5kb downstream 0.5kb downstream 2144 true scaffold_1: 28496897-28499040 Setaria italica
Seita.1G205700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28498541-28499040 Setaria italica
Seita.1G205700 1.0kb upstream 1.0kb upstream 2644 true scaffold_1: 28495897-28498540 Setaria italica
Seita.1G205700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28495897-28496896 Setaria italica
Seita.1G205700 1.0kb downstream 1.0kb downstream 2644 true scaffold_1: 28496897-28499540 Setaria italica
Seita.1G205700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28498541-28499540 Setaria italica
Seita.1G205700 2.0kb upstream 2.0kb upstream 3644 true scaffold_1: 28494897-28498540 Setaria italica
Seita.1G205700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28494897-28496896 Setaria italica
Seita.1G205700 2.0kb downstream 2.0kb downstream 3644 true scaffold_1: 28496897-28500540 Setaria italica
Seita.1G205700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28498541-28500540 Setaria italica
Seita.1G205700 5.0kb upstream 5.0kb upstream 6644 true scaffold_1: 28491897-28498540 Setaria italica
Seita.1G205700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28491897-28496896 Setaria italica
Seita.1G205700 5.0kb downstream 5.0kb downstream 6644 true scaffold_1: 28496897-28503540 Setaria italica
Seita.1G205700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28498541-28503540 Setaria italica
Seita.1G205700 10.0kb upstream 10.0kb upstream 11644 true scaffold_1: 28486897-28498540 Setaria italica
Seita.1G205700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28486897-28496896 Setaria italica
Seita.1G205700 10.0kb downstream 10.0kb downstream 11644 true scaffold_1: 28496897-28508540 Setaria italica
Seita.1G205700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28498541-28508540 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122115983 5267 Panicoideae View MSA
124410781 5269 Grass View MSA
122048735 5273 Angiosperm View MSA
121311088 5274 Embryophyte View MSA
123348435 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.097     Low  
cufflinks 0.136       High
cufflinks 0.101        
cufflinks 0.031     Low  
cufflinks 0.035     Low  
cufflinks 0.089     Low  
cufflinks 0.054     Low  
cufflinks 0.056     Low  
cufflinks 0.029     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.06     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.245       High
cufflinks 0.065     Low  
cufflinks 0.035     Low  
cufflinks 0.15       High
cufflinks 0.011     Low Low
cufflinks 0.047     Low  
cufflinks 0.095     Low  

0 Strain