Gene : Seita.1G207100 S. italica v2.2
Defline:  (1 of 2) PTHR11875//PTHR11875:SF68 - TESTIS-SPECIFIC Y-ENCODED PROTEIN Genomic Order:  2071
Name:  ? Seita.1G207100 Secondary Identifier:  ? PAC:32697586
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G207100 0.5kb upstream 0.5kb upstream 4637 true scaffold_1: 28587754-28592390 Setaria italica
Seita.1G207100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28591891-28592390 Setaria italica
Seita.1G207100 0.5kb downstream 0.5kb downstream 4637 true scaffold_1: 28587254-28591890 Setaria italica
Seita.1G207100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28587254-28587753 Setaria italica
Seita.1G207100 1.0kb upstream 1.0kb upstream 5137 true scaffold_1: 28587754-28592890 Setaria italica
Seita.1G207100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28591891-28592890 Setaria italica
Seita.1G207100 1.0kb downstream 1.0kb downstream 5137 true scaffold_1: 28586754-28591890 Setaria italica
Seita.1G207100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28586754-28587753 Setaria italica
Seita.1G207100 2.0kb upstream 2.0kb upstream 6137 true scaffold_1: 28587754-28593890 Setaria italica
Seita.1G207100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28591891-28593890 Setaria italica
Seita.1G207100 2.0kb downstream 2.0kb downstream 6137 true scaffold_1: 28585754-28591890 Setaria italica
Seita.1G207100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28585754-28587753 Setaria italica
Seita.1G207100 5.0kb upstream 5.0kb upstream 9137 true scaffold_1: 28587754-28596890 Setaria italica
Seita.1G207100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28591891-28596890 Setaria italica
Seita.1G207100 5.0kb downstream 5.0kb downstream 9137 true scaffold_1: 28582754-28591890 Setaria italica
Seita.1G207100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28582754-28587753 Setaria italica
Seita.1G207100 10.0kb upstream 10.0kb upstream 14137 true scaffold_1: 28587754-28601890 Setaria italica
Seita.1G207100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28591891-28601890 Setaria italica
Seita.1G207100 10.0kb downstream 10.0kb downstream 14137 true scaffold_1: 28577754-28591890 Setaria italica
Seita.1G207100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28577754-28587753 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180409 5267 Panicoideae View MSA
124589362 5269 Grass View MSA
122049668 5273 Angiosperm View MSA
121348262 5274 Embryophyte View MSA
123426622 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.597     High  
cufflinks 26.627     High High
cufflinks 5.483       Low
cufflinks 3.184       Low
cufflinks 4.818       Low
cufflinks 28.197     High High
cufflinks 9.935        
cufflinks 15.421     High  
cufflinks 16.477     High  
cufflinks 19.498     High  
cufflinks 16.943     High  
cufflinks 16.583     High  
cufflinks 11.996        
cufflinks 10.628        
cufflinks 19.384     High  
cufflinks 7.422        
cufflinks 22.478     High  
cufflinks 8.619        
cufflinks 4.472       Low
cufflinks 20.264     High  

0 Strain