Gene : Seita.1G210800 S. italica v2.2
Defline:  (1 of 1) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  2108
Name:  ? Seita.1G210800 Secondary Identifier:  ? PAC:32696030
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G210800 0.5kb upstream 0.5kb upstream 1289 true scaffold_1: 28964343-28965631 Setaria italica
Seita.1G210800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28964343-28964842 Setaria italica
Seita.1G210800 0.5kb downstream 0.5kb downstream 1289 true scaffold_1: 28964843-28966131 Setaria italica
Seita.1G210800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28965632-28966131 Setaria italica
Seita.1G210800 1.0kb upstream 1.0kb upstream 1789 true scaffold_1: 28963843-28965631 Setaria italica
Seita.1G210800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28963843-28964842 Setaria italica
Seita.1G210800 1.0kb downstream 1.0kb downstream 1789 true scaffold_1: 28964843-28966631 Setaria italica
Seita.1G210800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28965632-28966631 Setaria italica
Seita.1G210800 2.0kb upstream 2.0kb upstream 2789 true scaffold_1: 28962843-28965631 Setaria italica
Seita.1G210800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28962843-28964842 Setaria italica
Seita.1G210800 2.0kb downstream 2.0kb downstream 2789 true scaffold_1: 28964843-28967631 Setaria italica
Seita.1G210800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28965632-28967631 Setaria italica
Seita.1G210800 5.0kb upstream 5.0kb upstream 5789 true scaffold_1: 28959843-28965631 Setaria italica
Seita.1G210800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28959843-28964842 Setaria italica
Seita.1G210800 5.0kb downstream 5.0kb downstream 5789 true scaffold_1: 28964843-28970631 Setaria italica
Seita.1G210800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28965632-28970631 Setaria italica
Seita.1G210800 10.0kb upstream 10.0kb upstream 10789 true scaffold_1: 28954843-28965631 Setaria italica
Seita.1G210800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28954843-28964842 Setaria italica
Seita.1G210800 10.0kb downstream 10.0kb downstream 10789 true scaffold_1: 28964843-28975631 Setaria italica
Seita.1G210800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28965632-28975631 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192944 5267 Panicoideae View MSA
124584693 5269 Grass View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.126        
cufflinks 15.405     High  
cufflinks 31.985     High  
cufflinks 61.488     High  
cufflinks 83.628     High  
cufflinks 15.076     High  
cufflinks 80.434     High  
cufflinks 155.972     High High
cufflinks 92.938     High  
cufflinks 17.864     High  
cufflinks 3.542        
cufflinks 0.249       Low
cufflinks 1.226        
cufflinks 32.081     High  
cufflinks 0.057     Low Low
cufflinks 77.026     High  
cufflinks 0.249       Low
cufflinks 6.013        
cufflinks 66.164     High  
cufflinks 0.111     Low Low

0 Strain