Gene : Seita.1G211100 S. italica v2.2
Defline:  (1 of 1) 2.2.1.9 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase / SEPHCHC synthase Genomic Order:  2111
Name:  ? Seita.1G211100 Secondary Identifier:  ? PAC:32695282
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5837 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G211100 0.5kb upstream 0.5kb upstream 14898 true scaffold_1: 29004423-29019320 Setaria italica
Seita.1G211100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29004423-29004922 Setaria italica
Seita.1G211100 0.5kb downstream 0.5kb downstream 14898 true scaffold_1: 29004923-29019820 Setaria italica
Seita.1G211100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29019321-29019820 Setaria italica
Seita.1G211100 1.0kb upstream 1.0kb upstream 15398 true scaffold_1: 29003923-29019320 Setaria italica
Seita.1G211100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29003923-29004922 Setaria italica
Seita.1G211100 1.0kb downstream 1.0kb downstream 15398 true scaffold_1: 29004923-29020320 Setaria italica
Seita.1G211100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29019321-29020320 Setaria italica
Seita.1G211100 2.0kb upstream 2.0kb upstream 16398 true scaffold_1: 29002923-29019320 Setaria italica
Seita.1G211100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29002923-29004922 Setaria italica
Seita.1G211100 2.0kb downstream 2.0kb downstream 16398 true scaffold_1: 29004923-29021320 Setaria italica
Seita.1G211100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29019321-29021320 Setaria italica
Seita.1G211100 5.0kb upstream 5.0kb upstream 19398 true scaffold_1: 28999923-29019320 Setaria italica
Seita.1G211100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28999923-29004922 Setaria italica
Seita.1G211100 5.0kb downstream 5.0kb downstream 19398 true scaffold_1: 29004923-29024320 Setaria italica
Seita.1G211100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29019321-29024320 Setaria italica
Seita.1G211100 10.0kb upstream 10.0kb upstream 24398 true scaffold_1: 28994923-29019320 Setaria italica
Seita.1G211100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28994923-29004922 Setaria italica
Seita.1G211100 10.0kb downstream 10.0kb downstream 24398 true scaffold_1: 29004923-29029320 Setaria italica
Seita.1G211100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29019321-29029320 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185330 5267 Panicoideae View MSA
124585464 5269 Grass View MSA
122043367 5273 Angiosperm View MSA
121345465 5274 Embryophyte View MSA
123425711 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.056       High
cufflinks 1.534        
cufflinks 3.597        
cufflinks 1.848        
cufflinks 1.717        
cufflinks 1.8        
cufflinks 3.552        
cufflinks 1.932        
cufflinks 4.034        
cufflinks 1.078        
cufflinks 3.291        
cufflinks 0.683       Low
cufflinks 1.0        
cufflinks 3.633        
cufflinks 0.942       Low
cufflinks 6.31       High
cufflinks 0.767       Low
cufflinks 4.695       High
cufflinks 1.451        
cufflinks 0.59       Low

0 Strain