Gene : Seita.1G211400 S. italica v2.2
Genomic Order:  2114 Name:  ? Seita.1G211400
Secondary Identifier:  ? PAC:32698235
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G211400 0.5kb upstream 0.5kb upstream 3679 true scaffold_1: 29038677-29042355 Setaria italica
Seita.1G211400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29041856-29042355 Setaria italica
Seita.1G211400 0.5kb downstream 0.5kb downstream 3679 true scaffold_1: 29038177-29041855 Setaria italica
Seita.1G211400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29038177-29038676 Setaria italica
Seita.1G211400 1.0kb upstream 1.0kb upstream 4179 true scaffold_1: 29038677-29042855 Setaria italica
Seita.1G211400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29041856-29042855 Setaria italica
Seita.1G211400 1.0kb downstream 1.0kb downstream 4179 true scaffold_1: 29037677-29041855 Setaria italica
Seita.1G211400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29037677-29038676 Setaria italica
Seita.1G211400 2.0kb upstream 2.0kb upstream 5179 true scaffold_1: 29038677-29043855 Setaria italica
Seita.1G211400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29041856-29043855 Setaria italica
Seita.1G211400 2.0kb downstream 2.0kb downstream 5179 true scaffold_1: 29036677-29041855 Setaria italica
Seita.1G211400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29036677-29038676 Setaria italica
Seita.1G211400 5.0kb upstream 5.0kb upstream 8179 true scaffold_1: 29038677-29046855 Setaria italica
Seita.1G211400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29041856-29046855 Setaria italica
Seita.1G211400 5.0kb downstream 5.0kb downstream 8179 true scaffold_1: 29033677-29041855 Setaria italica
Seita.1G211400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29033677-29038676 Setaria italica
Seita.1G211400 10.0kb upstream 10.0kb upstream 13179 true scaffold_1: 29038677-29051855 Setaria italica
Seita.1G211400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29041856-29051855 Setaria italica
Seita.1G211400 10.0kb downstream 10.0kb downstream 13179 true scaffold_1: 29028677-29041855 Setaria italica
Seita.1G211400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29028677-29038676 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184225 5267 Panicoideae View MSA
124584684 5269 Grass View MSA
122045033 5273 Angiosperm View MSA
121310389 5274 Embryophyte View MSA
123347885 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.053        
cufflinks 11.164       High
cufflinks 4.378       Low
cufflinks 4.641       Low
cufflinks 4.418       Low
cufflinks 11.251       High
cufflinks 9.707        
cufflinks 9.062        
cufflinks 7.528        
cufflinks 5.391        
cufflinks 9.512        
cufflinks 7.952        
cufflinks 6.19        
cufflinks 4.833       Low
cufflinks 10.272        
cufflinks 9.4        
cufflinks 9.539        
cufflinks 8.641        
cufflinks 4.49       Low
cufflinks 8.335        

0 Strain