Gene : Seita.1G213100 S. italica v2.2
Defline:  (1 of 3) PTHR24073:SF545 - RAS-RELATED PROTEIN RABB1C Genomic Order:  2131
Name:  ? Seita.1G213100 Secondary Identifier:  ? PAC:32696727
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G213100 0.5kb upstream 0.5kb upstream 3714 true scaffold_1: 29217890-29221603 Setaria italica
Seita.1G213100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29217890-29218389 Setaria italica
Seita.1G213100 0.5kb downstream 0.5kb downstream 3714 true scaffold_1: 29218390-29222103 Setaria italica
Seita.1G213100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29221604-29222103 Setaria italica
Seita.1G213100 1.0kb upstream 1.0kb upstream 4214 true scaffold_1: 29217390-29221603 Setaria italica
Seita.1G213100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29217390-29218389 Setaria italica
Seita.1G213100 1.0kb downstream 1.0kb downstream 4214 true scaffold_1: 29218390-29222603 Setaria italica
Seita.1G213100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29221604-29222603 Setaria italica
Seita.1G213100 2.0kb upstream 2.0kb upstream 5214 true scaffold_1: 29216390-29221603 Setaria italica
Seita.1G213100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29216390-29218389 Setaria italica
Seita.1G213100 2.0kb downstream 2.0kb downstream 5214 true scaffold_1: 29218390-29223603 Setaria italica
Seita.1G213100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29221604-29223603 Setaria italica
Seita.1G213100 5.0kb upstream 5.0kb upstream 8214 true scaffold_1: 29213390-29221603 Setaria italica
Seita.1G213100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29213390-29218389 Setaria italica
Seita.1G213100 5.0kb downstream 5.0kb downstream 8214 true scaffold_1: 29218390-29226603 Setaria italica
Seita.1G213100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29221604-29226603 Setaria italica
Seita.1G213100 10.0kb upstream 10.0kb upstream 13214 true scaffold_1: 29208390-29221603 Setaria italica
Seita.1G213100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29208390-29218389 Setaria italica
Seita.1G213100 10.0kb downstream 10.0kb downstream 13214 true scaffold_1: 29218390-29231603 Setaria italica
Seita.1G213100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29221604-29231603 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178645 5267 Panicoideae View MSA
124586010 5269 Grass View MSA
122043695 5273 Angiosperm View MSA
121349962 5274 Embryophyte View MSA
123426577 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.927     High Low
cufflinks 17.448     High  
cufflinks 16.905     High  
cufflinks 18.436     High  
cufflinks 21.143     High  
cufflinks 18.023     High  
cufflinks 20.356     High  
cufflinks 22.386     High High
cufflinks 19.515     High  
cufflinks 24.083     High High
cufflinks 19.73     High  
cufflinks 20.194     High  
cufflinks 22.253     High  
cufflinks 19.11     High  
cufflinks 23.759     High High
cufflinks 12.891     High Low
cufflinks 18.385     High  
cufflinks 17.759     High  
cufflinks 19.464     High  
cufflinks 20.135     High  

0 Strain