Gene : Seita.1G213900 S. italica v2.2
Defline:  (1 of 2) PTHR23344//PTHR23344:SF29 - GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE Genomic Order:  2139
Name:  ? Seita.1G213900 Secondary Identifier:  ? PAC:32695968
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7409 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G213900 0.5kb upstream 0.5kb upstream 5561 true scaffold_1: 29336750-29342310 Setaria italica
Seita.1G213900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29336750-29337249 Setaria italica
Seita.1G213900 0.5kb downstream 0.5kb downstream 5561 true scaffold_1: 29337250-29342810 Setaria italica
Seita.1G213900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29342311-29342810 Setaria italica
Seita.1G213900 1.0kb upstream 1.0kb upstream 6061 true scaffold_1: 29336250-29342310 Setaria italica
Seita.1G213900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29336250-29337249 Setaria italica
Seita.1G213900 1.0kb downstream 1.0kb downstream 6061 true scaffold_1: 29337250-29343310 Setaria italica
Seita.1G213900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29342311-29343310 Setaria italica
Seita.1G213900 2.0kb upstream 2.0kb upstream 7061 true scaffold_1: 29335250-29342310 Setaria italica
Seita.1G213900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29335250-29337249 Setaria italica
Seita.1G213900 2.0kb downstream 2.0kb downstream 7061 true scaffold_1: 29337250-29344310 Setaria italica
Seita.1G213900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29342311-29344310 Setaria italica
Seita.1G213900 5.0kb upstream 5.0kb upstream 10061 true scaffold_1: 29332250-29342310 Setaria italica
Seita.1G213900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29332250-29337249 Setaria italica
Seita.1G213900 5.0kb downstream 5.0kb downstream 10061 true scaffold_1: 29337250-29347310 Setaria italica
Seita.1G213900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29342311-29347310 Setaria italica
Seita.1G213900 10.0kb upstream 10.0kb upstream 15061 true scaffold_1: 29327250-29342310 Setaria italica
Seita.1G213900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29327250-29337249 Setaria italica
Seita.1G213900 10.0kb downstream 10.0kb downstream 15061 true scaffold_1: 29337250-29352310 Setaria italica
Seita.1G213900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29342311-29352310 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176009 5267 Panicoideae View MSA
124570308 5269 Grass View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.741     High  
cufflinks 33.992     High  
cufflinks 7.012       Low
cufflinks 12.022     High Low
cufflinks 32.398     High  
cufflinks 30.118     High  
cufflinks 50.996     High  
cufflinks 26.184     High  
cufflinks 55.838     High  
cufflinks 52.39     High  
cufflinks 88.816     High High
cufflinks 41.213     High  
cufflinks 38.274     High  
cufflinks 19.101     High  
cufflinks 56.088     High  
cufflinks 23.259     High  
cufflinks 57.094     High  
cufflinks 22.306     High  
cufflinks 28.28     High  
cufflinks 69.864     High High

0 Strain