Gene : Seita.1G214200 S. italica v2.2
Defline:  (1 of 2) PTHR24362:SF255 - SERINE/THREONINE-PROTEIN KINASE NEK1 Genomic Order:  2142
Name:  ? Seita.1G214200 Secondary Identifier:  ? PAC:32694325
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G214200 0.5kb upstream 0.5kb upstream 4397 true scaffold_1: 29354509-29358905 Setaria italica
Seita.1G214200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29358406-29358905 Setaria italica
Seita.1G214200 0.5kb downstream 0.5kb downstream 4397 true scaffold_1: 29354009-29358405 Setaria italica
Seita.1G214200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29354009-29354508 Setaria italica
Seita.1G214200 1.0kb upstream 1.0kb upstream 4897 true scaffold_1: 29354509-29359405 Setaria italica
Seita.1G214200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29358406-29359405 Setaria italica
Seita.1G214200 1.0kb downstream 1.0kb downstream 4897 true scaffold_1: 29353509-29358405 Setaria italica
Seita.1G214200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29353509-29354508 Setaria italica
Seita.1G214200 2.0kb upstream 2.0kb upstream 5897 true scaffold_1: 29354509-29360405 Setaria italica
Seita.1G214200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29358406-29360405 Setaria italica
Seita.1G214200 2.0kb downstream 2.0kb downstream 5897 true scaffold_1: 29352509-29358405 Setaria italica
Seita.1G214200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29352509-29354508 Setaria italica
Seita.1G214200 5.0kb upstream 5.0kb upstream 8897 true scaffold_1: 29354509-29363405 Setaria italica
Seita.1G214200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29358406-29363405 Setaria italica
Seita.1G214200 5.0kb downstream 5.0kb downstream 8897 true scaffold_1: 29349509-29358405 Setaria italica
Seita.1G214200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29349509-29354508 Setaria italica
Seita.1G214200 10.0kb upstream 10.0kb upstream 13897 true scaffold_1: 29354509-29368405 Setaria italica
Seita.1G214200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29358406-29368405 Setaria italica
Seita.1G214200 10.0kb downstream 10.0kb downstream 13897 true scaffold_1: 29344509-29358405 Setaria italica
Seita.1G214200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29344509-29354508 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185120 5267 Panicoideae View MSA
124568412 5269 Grass View MSA
122049152 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351770 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.196     High  
cufflinks 33.472     High High
cufflinks 2.408       Low
cufflinks 2.066       Low
cufflinks 3.627       Low
cufflinks 36.397     High High
cufflinks 13.917     High  
cufflinks 9.486        
cufflinks 10.369        
cufflinks 13.357        
cufflinks 19.884     High  
cufflinks 15.443     High  
cufflinks 33.302     High High
cufflinks 5.285        
cufflinks 26.509     High High
cufflinks 7.602        
cufflinks 14.317     High  
cufflinks 4.31       Low
cufflinks 3.543       Low
cufflinks 18.289     High  

0 Strain