Gene : Seita.1G215500 S. italica v2.2
Defline:  (1 of 1) PTHR10073:SF12 - MISMATCH REPAIR ENDONUCLEASE PMS2 Genomic Order:  2155
Name:  ? Seita.1G215500 Secondary Identifier:  ? PAC:32694499
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G215500 0.5kb upstream 0.5kb upstream 5778 true scaffold_1: 29516034-29521811 Setaria italica
Seita.1G215500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29521312-29521811 Setaria italica
Seita.1G215500 0.5kb downstream 0.5kb downstream 5778 true scaffold_1: 29515534-29521311 Setaria italica
Seita.1G215500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29515534-29516033 Setaria italica
Seita.1G215500 1.0kb upstream 1.0kb upstream 6278 true scaffold_1: 29516034-29522311 Setaria italica
Seita.1G215500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29521312-29522311 Setaria italica
Seita.1G215500 1.0kb downstream 1.0kb downstream 6278 true scaffold_1: 29515034-29521311 Setaria italica
Seita.1G215500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29515034-29516033 Setaria italica
Seita.1G215500 2.0kb upstream 2.0kb upstream 7278 true scaffold_1: 29516034-29523311 Setaria italica
Seita.1G215500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29521312-29523311 Setaria italica
Seita.1G215500 2.0kb downstream 2.0kb downstream 7278 true scaffold_1: 29514034-29521311 Setaria italica
Seita.1G215500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29514034-29516033 Setaria italica
Seita.1G215500 5.0kb upstream 5.0kb upstream 10278 true scaffold_1: 29516034-29526311 Setaria italica
Seita.1G215500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29521312-29526311 Setaria italica
Seita.1G215500 5.0kb downstream 5.0kb downstream 10278 true scaffold_1: 29511034-29521311 Setaria italica
Seita.1G215500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29511034-29516033 Setaria italica
Seita.1G215500 10.0kb upstream 10.0kb upstream 15278 true scaffold_1: 29516034-29531311 Setaria italica
Seita.1G215500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29521312-29531311 Setaria italica
Seita.1G215500 10.0kb downstream 10.0kb downstream 15278 true scaffold_1: 29506034-29521311 Setaria italica
Seita.1G215500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29506034-29516033 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196418 5267 Panicoideae View MSA
124588392 5269 Grass View MSA
122044481 5273 Angiosperm View MSA
121344102 5274 Embryophyte View MSA
123426273 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.876       High
cufflinks 2.461        
cufflinks 1.673        
cufflinks 0.704       Low
cufflinks 0.962        
cufflinks 2.711        
cufflinks 1.596        
cufflinks 1.241        
cufflinks 2.685        
cufflinks 1.163        
cufflinks 2.516        
cufflinks 1.106        
cufflinks 0.869       Low
cufflinks 2.877       High
cufflinks 1.199        
cufflinks 2.818       High
cufflinks 1.21        
cufflinks 3.5       High
cufflinks 0.483       Low
cufflinks 1.312        

0 Strain