Gene : Seita.1G218900 S. italica v2.2
Defline:  (1 of 1) PTHR12231:SF150 - RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC Genomic Order:  2189
Name:  ? Seita.1G218900 Secondary Identifier:  ? PAC:32695926
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G218900 0.5kb upstream 0.5kb upstream 3342 true scaffold_1: 29808568-29811909 Setaria italica
Seita.1G218900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29811410-29811909 Setaria italica
Seita.1G218900 0.5kb downstream 0.5kb downstream 3342 true scaffold_1: 29808068-29811409 Setaria italica
Seita.1G218900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29808068-29808567 Setaria italica
Seita.1G218900 1.0kb upstream 1.0kb upstream 3842 true scaffold_1: 29808568-29812409 Setaria italica
Seita.1G218900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29811410-29812409 Setaria italica
Seita.1G218900 1.0kb downstream 1.0kb downstream 3842 true scaffold_1: 29807568-29811409 Setaria italica
Seita.1G218900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29807568-29808567 Setaria italica
Seita.1G218900 2.0kb upstream 2.0kb upstream 4842 true scaffold_1: 29808568-29813409 Setaria italica
Seita.1G218900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29811410-29813409 Setaria italica
Seita.1G218900 2.0kb downstream 2.0kb downstream 4842 true scaffold_1: 29806568-29811409 Setaria italica
Seita.1G218900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29806568-29808567 Setaria italica
Seita.1G218900 5.0kb upstream 5.0kb upstream 7842 true scaffold_1: 29808568-29816409 Setaria italica
Seita.1G218900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29811410-29816409 Setaria italica
Seita.1G218900 5.0kb downstream 5.0kb downstream 7842 true scaffold_1: 29803568-29811409 Setaria italica
Seita.1G218900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29803568-29808567 Setaria italica
Seita.1G218900 10.0kb upstream 10.0kb upstream 12842 true scaffold_1: 29808568-29821409 Setaria italica
Seita.1G218900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29811410-29821409 Setaria italica
Seita.1G218900 10.0kb downstream 10.0kb downstream 12842 true scaffold_1: 29798568-29811409 Setaria italica
Seita.1G218900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29798568-29808567 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183849 5267 Panicoideae View MSA
124572385 5269 Grass View MSA
122048365 5273 Angiosperm View MSA
121346213 5274 Embryophyte View MSA
123428656 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.401        
cufflinks 7.942        
cufflinks 2.209        
cufflinks 4.497        
cufflinks 18.012     High High
cufflinks 7.992        
cufflinks 24.001     High High
cufflinks 24.131     High High
cufflinks 37.024     High High
cufflinks 4.753        
cufflinks 2.726        
cufflinks 0.122     Low Low
cufflinks 0.199       Low
cufflinks 1.068        
cufflinks 0.229       Low
cufflinks 13.093     High  
cufflinks 0.255       Low
cufflinks 1.105        
cufflinks 1.102        
cufflinks 0.247       Low

0 Strain