Gene : Seita.1G219000 S. italica v2.2
Defline:  (1 of 1) PTHR12960 - GLE-1-RELATED Genomic Order:  2190
Name:  ? Seita.1G219000 Secondary Identifier:  ? PAC:32694287
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G219000 0.5kb upstream 0.5kb upstream 10783 true scaffold_1: 29811821-29822603 Setaria italica
Seita.1G219000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29822104-29822603 Setaria italica
Seita.1G219000 0.5kb downstream 0.5kb downstream 10783 true scaffold_1: 29811321-29822103 Setaria italica
Seita.1G219000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29811321-29811820 Setaria italica
Seita.1G219000 1.0kb upstream 1.0kb upstream 11283 true scaffold_1: 29811821-29823103 Setaria italica
Seita.1G219000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29822104-29823103 Setaria italica
Seita.1G219000 1.0kb downstream 1.0kb downstream 11283 true scaffold_1: 29810821-29822103 Setaria italica
Seita.1G219000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29810821-29811820 Setaria italica
Seita.1G219000 2.0kb upstream 2.0kb upstream 12283 true scaffold_1: 29811821-29824103 Setaria italica
Seita.1G219000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29822104-29824103 Setaria italica
Seita.1G219000 2.0kb downstream 2.0kb downstream 12283 true scaffold_1: 29809821-29822103 Setaria italica
Seita.1G219000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29809821-29811820 Setaria italica
Seita.1G219000 5.0kb upstream 5.0kb upstream 15283 true scaffold_1: 29811821-29827103 Setaria italica
Seita.1G219000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29822104-29827103 Setaria italica
Seita.1G219000 5.0kb downstream 5.0kb downstream 15283 true scaffold_1: 29806821-29822103 Setaria italica
Seita.1G219000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29806821-29811820 Setaria italica
Seita.1G219000 10.0kb upstream 10.0kb upstream 20283 true scaffold_1: 29811821-29832103 Setaria italica
Seita.1G219000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29822104-29832103 Setaria italica
Seita.1G219000 10.0kb downstream 10.0kb downstream 20283 true scaffold_1: 29801821-29822103 Setaria italica
Seita.1G219000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29801821-29811820 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177110 5267 Panicoideae View MSA
124576929 5269 Grass View MSA
122045266 5273 Angiosperm View MSA
121346292 5274 Embryophyte View MSA
123425199 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.863        
cufflinks 1.721        
cufflinks 1.122       Low
cufflinks 1.054       Low
cufflinks 1.078       Low
cufflinks 1.866        
cufflinks 1.511        
cufflinks 1.603        
cufflinks 1.289        
cufflinks 0.991       Low
cufflinks 1.649        
cufflinks 2.208       High
cufflinks 1.616        
cufflinks 1.031       Low
cufflinks 1.872        
cufflinks 1.622        
cufflinks 2.121       High
cufflinks 1.677        
cufflinks 0.948       Low
cufflinks 2.204       High

0 Strain