Gene : Seita.1G217000 S. italica v2.2
Defline:  (1 of 194) PF00847 - AP2 domain (AP2) Genomic Order:  2170
Name:  ? Seita.1G217000 Secondary Identifier:  ? PAC:32696962
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G217000 0.5kb upstream 0.5kb upstream 1370 true scaffold_1: 29615060-29616429 Setaria italica
Seita.1G217000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29615060-29615559 Setaria italica
Seita.1G217000 0.5kb downstream 0.5kb downstream 1370 true scaffold_1: 29615560-29616929 Setaria italica
Seita.1G217000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29616430-29616929 Setaria italica
Seita.1G217000 1.0kb upstream 1.0kb upstream 1870 true scaffold_1: 29614560-29616429 Setaria italica
Seita.1G217000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29614560-29615559 Setaria italica
Seita.1G217000 1.0kb downstream 1.0kb downstream 1870 true scaffold_1: 29615560-29617429 Setaria italica
Seita.1G217000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29616430-29617429 Setaria italica
Seita.1G217000 2.0kb upstream 2.0kb upstream 2870 true scaffold_1: 29613560-29616429 Setaria italica
Seita.1G217000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29613560-29615559 Setaria italica
Seita.1G217000 2.0kb downstream 2.0kb downstream 2870 true scaffold_1: 29615560-29618429 Setaria italica
Seita.1G217000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29616430-29618429 Setaria italica
Seita.1G217000 5.0kb upstream 5.0kb upstream 5870 true scaffold_1: 29610560-29616429 Setaria italica
Seita.1G217000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29610560-29615559 Setaria italica
Seita.1G217000 5.0kb downstream 5.0kb downstream 5870 true scaffold_1: 29615560-29621429 Setaria italica
Seita.1G217000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29616430-29621429 Setaria italica
Seita.1G217000 10.0kb upstream 10.0kb upstream 10870 true scaffold_1: 29605560-29616429 Setaria italica
Seita.1G217000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29605560-29615559 Setaria italica
Seita.1G217000 10.0kb downstream 10.0kb downstream 10870 true scaffold_1: 29615560-29626429 Setaria italica
Seita.1G217000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29616430-29626429 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199421 5267 Panicoideae View MSA
124579993 5269 Grass View MSA
122048706 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.02     Low  
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain