Gene : Seita.1G221000 S. italica v2.2
Defline:  (1 of 1) KOG4346 - Uncharacterized conserved protein Genomic Order:  2210
Name:  ? Seita.1G221000 Secondary Identifier:  ? PAC:32697567
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G221000 0.5kb upstream 0.5kb upstream 7556 true scaffold_1: 29979005-29986560 Setaria italica
Seita.1G221000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29979005-29979504 Setaria italica
Seita.1G221000 0.5kb downstream 0.5kb downstream 7556 true scaffold_1: 29979505-29987060 Setaria italica
Seita.1G221000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29986561-29987060 Setaria italica
Seita.1G221000 1.0kb upstream 1.0kb upstream 8056 true scaffold_1: 29978505-29986560 Setaria italica
Seita.1G221000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29978505-29979504 Setaria italica
Seita.1G221000 1.0kb downstream 1.0kb downstream 8056 true scaffold_1: 29979505-29987560 Setaria italica
Seita.1G221000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29986561-29987560 Setaria italica
Seita.1G221000 2.0kb upstream 2.0kb upstream 9056 true scaffold_1: 29977505-29986560 Setaria italica
Seita.1G221000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29977505-29979504 Setaria italica
Seita.1G221000 2.0kb downstream 2.0kb downstream 9056 true scaffold_1: 29979505-29988560 Setaria italica
Seita.1G221000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29986561-29988560 Setaria italica
Seita.1G221000 5.0kb upstream 5.0kb upstream 12056 true scaffold_1: 29974505-29986560 Setaria italica
Seita.1G221000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29974505-29979504 Setaria italica
Seita.1G221000 5.0kb downstream 5.0kb downstream 12056 true scaffold_1: 29979505-29991560 Setaria italica
Seita.1G221000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29986561-29991560 Setaria italica
Seita.1G221000 10.0kb upstream 10.0kb upstream 17056 true scaffold_1: 29969505-29986560 Setaria italica
Seita.1G221000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29969505-29979504 Setaria italica
Seita.1G221000 10.0kb downstream 10.0kb downstream 17056 true scaffold_1: 29979505-29996560 Setaria italica
Seita.1G221000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29986561-29996560 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183944 5267 Panicoideae View MSA
124587785 5269 Grass View MSA
122046631 5273 Angiosperm View MSA
121345075 5274 Embryophyte View MSA
123425275 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.626       High
cufflinks 5.031        
cufflinks 3.7        
cufflinks 2.746        
cufflinks 2.38       Low
cufflinks 4.087        
cufflinks 4.1        
cufflinks 2.905        
cufflinks 2.774        
cufflinks 1.638       Low
cufflinks 4.097        
cufflinks 4.119        
cufflinks 3.721        
cufflinks 2.942        
cufflinks 4.115        
cufflinks 5.619       High
cufflinks 3.69        
cufflinks 10.908       High
cufflinks 2.38       Low
cufflinks 3.632        

0 Strain