Gene : Seita.1G219900 S. italica v2.2
Defline:  (1 of 1) PTHR22504 - REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1 Genomic Order:  2199
Name:  ? Seita.1G219900 Secondary Identifier:  ? PAC:32696612
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G219900 0.5kb upstream 0.5kb upstream 4351 true scaffold_1: 29900021-29904371 Setaria italica
Seita.1G219900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29903872-29904371 Setaria italica
Seita.1G219900 0.5kb downstream 0.5kb downstream 4351 true scaffold_1: 29899521-29903871 Setaria italica
Seita.1G219900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29899521-29900020 Setaria italica
Seita.1G219900 1.0kb upstream 1.0kb upstream 4851 true scaffold_1: 29900021-29904871 Setaria italica
Seita.1G219900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29903872-29904871 Setaria italica
Seita.1G219900 1.0kb downstream 1.0kb downstream 4851 true scaffold_1: 29899021-29903871 Setaria italica
Seita.1G219900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29899021-29900020 Setaria italica
Seita.1G219900 2.0kb upstream 2.0kb upstream 5851 true scaffold_1: 29900021-29905871 Setaria italica
Seita.1G219900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29903872-29905871 Setaria italica
Seita.1G219900 2.0kb downstream 2.0kb downstream 5851 true scaffold_1: 29898021-29903871 Setaria italica
Seita.1G219900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29898021-29900020 Setaria italica
Seita.1G219900 5.0kb upstream 5.0kb upstream 8851 true scaffold_1: 29900021-29908871 Setaria italica
Seita.1G219900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29903872-29908871 Setaria italica
Seita.1G219900 5.0kb downstream 5.0kb downstream 8851 true scaffold_1: 29895021-29903871 Setaria italica
Seita.1G219900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29895021-29900020 Setaria italica
Seita.1G219900 10.0kb upstream 10.0kb upstream 13851 true scaffold_1: 29900021-29913871 Setaria italica
Seita.1G219900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29903872-29913871 Setaria italica
Seita.1G219900 10.0kb downstream 10.0kb downstream 13851 true scaffold_1: 29890021-29903871 Setaria italica
Seita.1G219900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29890021-29900020 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191503 5267 Panicoideae View MSA
124573497 5269 Grass View MSA
122047316 5273 Angiosperm View MSA
121345866 5274 Embryophyte View MSA
123424535 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.645     High  
cufflinks 27.084     High High
cufflinks 7.763       Low
cufflinks 8.275       Low
cufflinks 7.369       Low
cufflinks 23.31     High  
cufflinks 19.203     High  
cufflinks 16.437     High  
cufflinks 16.48     High  
cufflinks 22.511     High  
cufflinks 15.978     High  
cufflinks 18.485     High  
cufflinks 16.318     High  
cufflinks 7.781       Low
cufflinks 15.565     High  
cufflinks 20.669     High  
cufflinks 22.376     High  
cufflinks 16.319     High  
cufflinks 7.035       Low
cufflinks 20.22     High  

0 Strain