Gene : Seita.1G220000 S. italica v2.2
Defline:  (1 of 1) PTHR11937:SF31 - ACTIN-RELATED PROTEIN 3 Genomic Order:  2200
Name:  ? Seita.1G220000 Secondary Identifier:  ? PAC:32694299
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G220000 0.5kb upstream 0.5kb upstream 4592 true scaffold_1: 29906652-29911243 Setaria italica
Seita.1G220000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29906652-29907151 Setaria italica
Seita.1G220000 0.5kb downstream 0.5kb downstream 4592 true scaffold_1: 29907152-29911743 Setaria italica
Seita.1G220000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29911244-29911743 Setaria italica
Seita.1G220000 1.0kb upstream 1.0kb upstream 5092 true scaffold_1: 29906152-29911243 Setaria italica
Seita.1G220000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29906152-29907151 Setaria italica
Seita.1G220000 1.0kb downstream 1.0kb downstream 5092 true scaffold_1: 29907152-29912243 Setaria italica
Seita.1G220000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29911244-29912243 Setaria italica
Seita.1G220000 2.0kb upstream 2.0kb upstream 6092 true scaffold_1: 29905152-29911243 Setaria italica
Seita.1G220000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29905152-29907151 Setaria italica
Seita.1G220000 2.0kb downstream 2.0kb downstream 6092 true scaffold_1: 29907152-29913243 Setaria italica
Seita.1G220000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29911244-29913243 Setaria italica
Seita.1G220000 5.0kb upstream 5.0kb upstream 9092 true scaffold_1: 29902152-29911243 Setaria italica
Seita.1G220000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29902152-29907151 Setaria italica
Seita.1G220000 5.0kb downstream 5.0kb downstream 9092 true scaffold_1: 29907152-29916243 Setaria italica
Seita.1G220000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29911244-29916243 Setaria italica
Seita.1G220000 10.0kb upstream 10.0kb upstream 14092 true scaffold_1: 29897152-29911243 Setaria italica
Seita.1G220000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29897152-29907151 Setaria italica
Seita.1G220000 10.0kb downstream 10.0kb downstream 14092 true scaffold_1: 29907152-29921243 Setaria italica
Seita.1G220000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29911244-29921243 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186617 5267 Panicoideae View MSA
124577862 5269 Grass View MSA
122045834 5273 Angiosperm View MSA
121348925 5274 Embryophyte View MSA
123426550 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.495        
cufflinks 12.957        
cufflinks 0.524       Low
cufflinks 0.82       Low
cufflinks 4.813        
cufflinks 13.325     High  
cufflinks 9.539        
cufflinks 11.933        
cufflinks 11.631        
cufflinks 13.803        
cufflinks 11.194        
cufflinks 9.994        
cufflinks 14.998     High  
cufflinks 1.288       Low
cufflinks 13.69        
cufflinks 4.202        
cufflinks 10.935        
cufflinks 5.408        
cufflinks 1.182       Low
cufflinks 14.16        

0 Strain