Gene : Seita.1G222600 S. italica v2.2
Defline:  (1 of 1) PTHR13068:SF9 - MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN Genomic Order:  2226
Name:  ? Seita.1G222600 Secondary Identifier:  ? PAC:32697107
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G222600 0.5kb upstream 0.5kb upstream 3762 true scaffold_1: 30087899-30091660 Setaria italica
Seita.1G222600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30087899-30088398 Setaria italica
Seita.1G222600 0.5kb downstream 0.5kb downstream 3762 true scaffold_1: 30088399-30092160 Setaria italica
Seita.1G222600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30091661-30092160 Setaria italica
Seita.1G222600 1.0kb upstream 1.0kb upstream 4262 true scaffold_1: 30087399-30091660 Setaria italica
Seita.1G222600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30087399-30088398 Setaria italica
Seita.1G222600 1.0kb downstream 1.0kb downstream 4262 true scaffold_1: 30088399-30092660 Setaria italica
Seita.1G222600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30091661-30092660 Setaria italica
Seita.1G222600 2.0kb upstream 2.0kb upstream 5262 true scaffold_1: 30086399-30091660 Setaria italica
Seita.1G222600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30086399-30088398 Setaria italica
Seita.1G222600 2.0kb downstream 2.0kb downstream 5262 true scaffold_1: 30088399-30093660 Setaria italica
Seita.1G222600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30091661-30093660 Setaria italica
Seita.1G222600 5.0kb upstream 5.0kb upstream 8262 true scaffold_1: 30083399-30091660 Setaria italica
Seita.1G222600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30083399-30088398 Setaria italica
Seita.1G222600 5.0kb downstream 5.0kb downstream 8262 true scaffold_1: 30088399-30096660 Setaria italica
Seita.1G222600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30091661-30096660 Setaria italica
Seita.1G222600 10.0kb upstream 10.0kb upstream 13262 true scaffold_1: 30078399-30091660 Setaria italica
Seita.1G222600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30078399-30088398 Setaria italica
Seita.1G222600 10.0kb downstream 10.0kb downstream 13262 true scaffold_1: 30088399-30101660 Setaria italica
Seita.1G222600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30091661-30101660 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188981 5267 Panicoideae View MSA
124577844 5269 Grass View MSA
122042803 5273 Angiosperm View MSA
121347478 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.028        
cufflinks 10.045        
cufflinks 14.246     High  
cufflinks 13.284     High  
cufflinks 16.032     High  
cufflinks 10.976        
cufflinks 16.072     High  
cufflinks 11.841        
cufflinks 23.289     High High
cufflinks 4.007       Low
cufflinks 6.562        
cufflinks 2.313       Low
cufflinks 6.194        
cufflinks 7.929        
cufflinks 3.155       Low
cufflinks 15.878     High  
cufflinks 3.064       Low
cufflinks 13.972     High  
cufflinks 8.352        
cufflinks 3.025       Low

0 Strain