Gene : Seita.1G222700 S. italica v2.2
Defline:  (1 of 1) KOG3068 - mRNA splicing factor Genomic Order:  2227
Name:  ? Seita.1G222700 Secondary Identifier:  ? PAC:32697113
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G222700 0.5kb upstream 0.5kb upstream 3444 true scaffold_1: 30091800-30095243 Setaria italica
Seita.1G222700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30094744-30095243 Setaria italica
Seita.1G222700 0.5kb downstream 0.5kb downstream 3444 true scaffold_1: 30091300-30094743 Setaria italica
Seita.1G222700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30091300-30091799 Setaria italica
Seita.1G222700 1.0kb upstream 1.0kb upstream 3944 true scaffold_1: 30091800-30095743 Setaria italica
Seita.1G222700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30094744-30095743 Setaria italica
Seita.1G222700 1.0kb downstream 1.0kb downstream 3944 true scaffold_1: 30090800-30094743 Setaria italica
Seita.1G222700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30090800-30091799 Setaria italica
Seita.1G222700 2.0kb upstream 2.0kb upstream 4944 true scaffold_1: 30091800-30096743 Setaria italica
Seita.1G222700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30094744-30096743 Setaria italica
Seita.1G222700 2.0kb downstream 2.0kb downstream 4944 true scaffold_1: 30089800-30094743 Setaria italica
Seita.1G222700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30089800-30091799 Setaria italica
Seita.1G222700 5.0kb upstream 5.0kb upstream 7944 true scaffold_1: 30091800-30099743 Setaria italica
Seita.1G222700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30094744-30099743 Setaria italica
Seita.1G222700 5.0kb downstream 5.0kb downstream 7944 true scaffold_1: 30086800-30094743 Setaria italica
Seita.1G222700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30086800-30091799 Setaria italica
Seita.1G222700 10.0kb upstream 10.0kb upstream 12944 true scaffold_1: 30091800-30104743 Setaria italica
Seita.1G222700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30094744-30104743 Setaria italica
Seita.1G222700 10.0kb downstream 10.0kb downstream 12944 true scaffold_1: 30081800-30094743 Setaria italica
Seita.1G222700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30081800-30091799 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183488 5267 Panicoideae View MSA
124574276 5269 Grass View MSA
122043978 5273 Angiosperm View MSA
121345749 5274 Embryophyte View MSA
123424977 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.43        
cufflinks 9.208       High
cufflinks 4.789        
cufflinks 5.195        
cufflinks 3.709       Low
cufflinks 9.144       High
cufflinks 4.185       Low
cufflinks 6.398        
cufflinks 4.63        
cufflinks 5.424        
cufflinks 5.862        
cufflinks 7.486        
cufflinks 3.684       Low
cufflinks 5.77        
cufflinks 6.188        
cufflinks 4.548        
cufflinks 7.224        
cufflinks 8.653       High
cufflinks 4.739        
cufflinks 6.076        

0 Strain