Gene : Seita.1G225400 S. italica v2.2
Genomic Order:  2254 Name:  ? Seita.1G225400
Secondary Identifier:  ? PAC:32693819
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G225400 0.5kb upstream 0.5kb upstream 4169 true scaffold_1: 30266834-30271002 Setaria italica
Seita.1G225400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30266834-30267333 Setaria italica
Seita.1G225400 0.5kb downstream 0.5kb downstream 4169 true scaffold_1: 30267334-30271502 Setaria italica
Seita.1G225400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30271003-30271502 Setaria italica
Seita.1G225400 1.0kb upstream 1.0kb upstream 4669 true scaffold_1: 30266334-30271002 Setaria italica
Seita.1G225400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30266334-30267333 Setaria italica
Seita.1G225400 1.0kb downstream 1.0kb downstream 4669 true scaffold_1: 30267334-30272002 Setaria italica
Seita.1G225400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30271003-30272002 Setaria italica
Seita.1G225400 2.0kb upstream 2.0kb upstream 5669 true scaffold_1: 30265334-30271002 Setaria italica
Seita.1G225400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30265334-30267333 Setaria italica
Seita.1G225400 2.0kb downstream 2.0kb downstream 5669 true scaffold_1: 30267334-30273002 Setaria italica
Seita.1G225400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30271003-30273002 Setaria italica
Seita.1G225400 5.0kb upstream 5.0kb upstream 8669 true scaffold_1: 30262334-30271002 Setaria italica
Seita.1G225400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30262334-30267333 Setaria italica
Seita.1G225400 5.0kb downstream 5.0kb downstream 8669 true scaffold_1: 30267334-30276002 Setaria italica
Seita.1G225400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30271003-30276002 Setaria italica
Seita.1G225400 10.0kb upstream 10.0kb upstream 13669 true scaffold_1: 30257334-30271002 Setaria italica
Seita.1G225400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30257334-30267333 Setaria italica
Seita.1G225400 10.0kb downstream 10.0kb downstream 13669 true scaffold_1: 30267334-30281002 Setaria italica
Seita.1G225400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30271003-30281002 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175643 5267 Panicoideae View MSA
124584826 5269 Grass View MSA
122046829 5273 Angiosperm View MSA
121348564 5274 Embryophyte View MSA
123380915 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.322       High
cufflinks 6.019        
cufflinks 6.277        
cufflinks 6.7        
cufflinks 7.719        
cufflinks 5.729        
cufflinks 7.603        
cufflinks 6.568        
cufflinks 6.76        
cufflinks 3.813       Low
cufflinks 6.339        
cufflinks 7.935        
cufflinks 6.167        
cufflinks 5.015       Low
cufflinks 6.117        
cufflinks 12.33     High High
cufflinks 8.167        
cufflinks 9.745       High
cufflinks 6.095        
cufflinks 5.786        

0 Strain