Gene : Seita.1G228100 S. italica v2.2
Defline:  (1 of 2) PF12204 - Domain of unknown function (DUF3598) (DUF3598) Genomic Order:  2281
Name:  ? Seita.1G228100 Secondary Identifier:  ? PAC:32696045
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G228100 0.5kb upstream 0.5kb upstream 3192 true scaffold_1: 30490343-30493534 Setaria italica
Seita.1G228100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30490343-30490842 Setaria italica
Seita.1G228100 0.5kb downstream 0.5kb downstream 3192 true scaffold_1: 30490843-30494034 Setaria italica
Seita.1G228100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30493535-30494034 Setaria italica
Seita.1G228100 1.0kb upstream 1.0kb upstream 3692 true scaffold_1: 30489843-30493534 Setaria italica
Seita.1G228100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30489843-30490842 Setaria italica
Seita.1G228100 1.0kb downstream 1.0kb downstream 3692 true scaffold_1: 30490843-30494534 Setaria italica
Seita.1G228100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30493535-30494534 Setaria italica
Seita.1G228100 2.0kb upstream 2.0kb upstream 4692 true scaffold_1: 30488843-30493534 Setaria italica
Seita.1G228100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30488843-30490842 Setaria italica
Seita.1G228100 2.0kb downstream 2.0kb downstream 4692 true scaffold_1: 30490843-30495534 Setaria italica
Seita.1G228100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30493535-30495534 Setaria italica
Seita.1G228100 5.0kb upstream 5.0kb upstream 7692 true scaffold_1: 30485843-30493534 Setaria italica
Seita.1G228100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30485843-30490842 Setaria italica
Seita.1G228100 5.0kb downstream 5.0kb downstream 7692 true scaffold_1: 30490843-30498534 Setaria italica
Seita.1G228100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30493535-30498534 Setaria italica
Seita.1G228100 10.0kb upstream 10.0kb upstream 12692 true scaffold_1: 30480843-30493534 Setaria italica
Seita.1G228100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30480843-30490842 Setaria italica
Seita.1G228100 10.0kb downstream 10.0kb downstream 12692 true scaffold_1: 30490843-30503534 Setaria italica
Seita.1G228100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30493535-30503534 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196073 5267 Panicoideae View MSA
124589291 5269 Grass View MSA
122045583 5273 Angiosperm View MSA
121345533 5274 Embryophyte View MSA
123380234 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.803        
cufflinks 4.015        
cufflinks 1.971        
cufflinks 1.173        
cufflinks 5.794        
cufflinks 3.894        
cufflinks 9.057       High
cufflinks 10.627       High
cufflinks 25.017     High High
cufflinks 3.59        
cufflinks 2.708        
cufflinks 0.405       Low
cufflinks 0.717       Low
cufflinks 4.48        
cufflinks 0.389       Low
cufflinks 5.509        
cufflinks 0.581       Low
cufflinks 3.539        
cufflinks 1.035        
cufflinks 0.534       Low

0 Strain