Gene : Seita.1G231100 S. italica v2.2
Defline:  (1 of 3) PTHR10744//PTHR10744:SF10 - 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Genomic Order:  2311
Name:  ? Seita.1G231100 Secondary Identifier:  ? PAC:32696760
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G231100 0.5kb upstream 0.5kb upstream 3158 true scaffold_1: 30717667-30720824 Setaria italica
Seita.1G231100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30720325-30720824 Setaria italica
Seita.1G231100 0.5kb downstream 0.5kb downstream 3158 true scaffold_1: 30717167-30720324 Setaria italica
Seita.1G231100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30717167-30717666 Setaria italica
Seita.1G231100 1.0kb upstream 1.0kb upstream 3658 true scaffold_1: 30717667-30721324 Setaria italica
Seita.1G231100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30720325-30721324 Setaria italica
Seita.1G231100 1.0kb downstream 1.0kb downstream 3658 true scaffold_1: 30716667-30720324 Setaria italica
Seita.1G231100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30716667-30717666 Setaria italica
Seita.1G231100 2.0kb upstream 2.0kb upstream 4658 true scaffold_1: 30717667-30722324 Setaria italica
Seita.1G231100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30720325-30722324 Setaria italica
Seita.1G231100 2.0kb downstream 2.0kb downstream 4658 true scaffold_1: 30715667-30720324 Setaria italica
Seita.1G231100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30715667-30717666 Setaria italica
Seita.1G231100 5.0kb upstream 5.0kb upstream 7658 true scaffold_1: 30717667-30725324 Setaria italica
Seita.1G231100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30720325-30725324 Setaria italica
Seita.1G231100 5.0kb downstream 5.0kb downstream 7658 true scaffold_1: 30712667-30720324 Setaria italica
Seita.1G231100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30712667-30717666 Setaria italica
Seita.1G231100 10.0kb upstream 10.0kb upstream 12658 true scaffold_1: 30717667-30730324 Setaria italica
Seita.1G231100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30720325-30730324 Setaria italica
Seita.1G231100 10.0kb downstream 10.0kb downstream 12658 true scaffold_1: 30707667-30720324 Setaria italica
Seita.1G231100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30707667-30717666 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122200031 5267 Panicoideae View MSA
124580462 5269 Grass View MSA
122044220 5273 Angiosperm View MSA
121344694 5274 Embryophyte View MSA
123428242 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.474     High  
cufflinks 29.386     High  
cufflinks 9.846       Low
cufflinks 5.177       Low
cufflinks 11.625     High  
cufflinks 33.033     High  
cufflinks 21.19     High  
cufflinks 42.739     High High
cufflinks 59.055     High High
cufflinks 34.088     High  
cufflinks 24.6     High  
cufflinks 30.549     High  
cufflinks 24.597     High  
cufflinks 23.8     High  
cufflinks 29.691     High  
cufflinks 8.539       Low
cufflinks 44.299     High High
cufflinks 7.096       Low
cufflinks 14.122     High  
cufflinks 40.436     High  

0 Strain