Gene : Seita.1G229000 S. italica v2.2
Genomic Order:  2290 Name:  ? Seita.1G229000
Secondary Identifier:  ? PAC:32697813
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G229000 0.5kb upstream 0.5kb upstream 3016 true scaffold_1: 30556569-30559584 Setaria italica
Seita.1G229000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30559085-30559584 Setaria italica
Seita.1G229000 0.5kb downstream 0.5kb downstream 3016 true scaffold_1: 30556069-30559084 Setaria italica
Seita.1G229000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30556069-30556568 Setaria italica
Seita.1G229000 1.0kb upstream 1.0kb upstream 3516 true scaffold_1: 30556569-30560084 Setaria italica
Seita.1G229000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30559085-30560084 Setaria italica
Seita.1G229000 1.0kb downstream 1.0kb downstream 3516 true scaffold_1: 30555569-30559084 Setaria italica
Seita.1G229000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30555569-30556568 Setaria italica
Seita.1G229000 2.0kb upstream 2.0kb upstream 4516 true scaffold_1: 30556569-30561084 Setaria italica
Seita.1G229000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30559085-30561084 Setaria italica
Seita.1G229000 2.0kb downstream 2.0kb downstream 4516 true scaffold_1: 30554569-30559084 Setaria italica
Seita.1G229000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30554569-30556568 Setaria italica
Seita.1G229000 5.0kb upstream 5.0kb upstream 7516 true scaffold_1: 30556569-30564084 Setaria italica
Seita.1G229000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30559085-30564084 Setaria italica
Seita.1G229000 5.0kb downstream 5.0kb downstream 7516 true scaffold_1: 30551569-30559084 Setaria italica
Seita.1G229000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30551569-30556568 Setaria italica
Seita.1G229000 10.0kb upstream 10.0kb upstream 12516 true scaffold_1: 30556569-30569084 Setaria italica
Seita.1G229000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30559085-30569084 Setaria italica
Seita.1G229000 10.0kb downstream 10.0kb downstream 12516 true scaffold_1: 30546569-30559084 Setaria italica
Seita.1G229000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30546569-30556568 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185871 5267 Panicoideae View MSA
124584004 5269 Grass View MSA
122046459 5273 Angiosperm View MSA
121346788 5274 Embryophyte View MSA
123380445 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.735        
cufflinks 2.45       Low
cufflinks 32.959     High High
cufflinks 42.163     High High
cufflinks 32.924     High High
cufflinks 2.308       Low
cufflinks 20.667     High  
cufflinks 30.635     High High
cufflinks 22.396     High  
cufflinks 3.487       Low
cufflinks 2.808       Low
cufflinks 6.673        
cufflinks 6.292        
cufflinks 14.149     High  
cufflinks 3.281       Low
cufflinks 35.76     High High
cufflinks 6.282        
cufflinks 10.416        
cufflinks 50.194     High High
cufflinks 4.221        

0 Strain