Gene : Seita.1G232300 S. italica v2.2
Defline:  (1 of 3) PF16166 - Chloroplast import apparatus Tic20-like (TIC20) Genomic Order:  2323
Name:  ? Seita.1G232300 Secondary Identifier:  ? PAC:32695685
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G232300 0.5kb upstream 0.5kb upstream 3886 true scaffold_1: 30814035-30817920 Setaria italica
Seita.1G232300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30814035-30814534 Setaria italica
Seita.1G232300 0.5kb downstream 0.5kb downstream 3886 true scaffold_1: 30814535-30818420 Setaria italica
Seita.1G232300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30817921-30818420 Setaria italica
Seita.1G232300 1.0kb upstream 1.0kb upstream 4386 true scaffold_1: 30813535-30817920 Setaria italica
Seita.1G232300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30813535-30814534 Setaria italica
Seita.1G232300 1.0kb downstream 1.0kb downstream 4386 true scaffold_1: 30814535-30818920 Setaria italica
Seita.1G232300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30817921-30818920 Setaria italica
Seita.1G232300 2.0kb upstream 2.0kb upstream 5386 true scaffold_1: 30812535-30817920 Setaria italica
Seita.1G232300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30812535-30814534 Setaria italica
Seita.1G232300 2.0kb downstream 2.0kb downstream 5386 true scaffold_1: 30814535-30819920 Setaria italica
Seita.1G232300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30817921-30819920 Setaria italica
Seita.1G232300 5.0kb upstream 5.0kb upstream 8386 true scaffold_1: 30809535-30817920 Setaria italica
Seita.1G232300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30809535-30814534 Setaria italica
Seita.1G232300 5.0kb downstream 5.0kb downstream 8386 true scaffold_1: 30814535-30822920 Setaria italica
Seita.1G232300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30817921-30822920 Setaria italica
Seita.1G232300 10.0kb upstream 10.0kb upstream 13386 true scaffold_1: 30804535-30817920 Setaria italica
Seita.1G232300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30804535-30814534 Setaria italica
Seita.1G232300 10.0kb downstream 10.0kb downstream 13386 true scaffold_1: 30814535-30827920 Setaria italica
Seita.1G232300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30817921-30827920 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198426 5267 Panicoideae View MSA
124589976 5269 Grass View MSA
122051187 5273 Angiosperm View MSA
121344668 5274 Embryophyte View MSA
123427529 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.164        
cufflinks 2.782        
cufflinks 0.793       Low
cufflinks 0.781       Low
cufflinks 1.481        
cufflinks 2.677        
cufflinks 3.307       High
cufflinks 2.561        
cufflinks 4.569       High
cufflinks 2.37        
cufflinks 2.183        
cufflinks 1.144        
cufflinks 1.196        
cufflinks 1.151        
cufflinks 2.069        
cufflinks 2.23        
cufflinks 1.396        
cufflinks 2.228        
cufflinks 1.014       Low
cufflinks 1.477        

0 Strain