Gene : Seita.1G231200 S. italica v2.2
Defline:  (1 of 1) KOG2643 - Ca2+ binding protein, contains EF-hand motifs Genomic Order:  2312
Name:  ? Seita.1G231200 Secondary Identifier:  ? PAC:32697142
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G231200 0.5kb upstream 0.5kb upstream 5363 true scaffold_1: 30720988-30726350 Setaria italica
Seita.1G231200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 30720988-30721487 Setaria italica
Seita.1G231200 0.5kb downstream 0.5kb downstream 5363 true scaffold_1: 30721488-30726850 Setaria italica
Seita.1G231200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 30726351-30726850 Setaria italica
Seita.1G231200 1.0kb upstream 1.0kb upstream 5863 true scaffold_1: 30720488-30726350 Setaria italica
Seita.1G231200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 30720488-30721487 Setaria italica
Seita.1G231200 1.0kb downstream 1.0kb downstream 5863 true scaffold_1: 30721488-30727350 Setaria italica
Seita.1G231200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 30726351-30727350 Setaria italica
Seita.1G231200 2.0kb upstream 2.0kb upstream 6863 true scaffold_1: 30719488-30726350 Setaria italica
Seita.1G231200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 30719488-30721487 Setaria italica
Seita.1G231200 2.0kb downstream 2.0kb downstream 6863 true scaffold_1: 30721488-30728350 Setaria italica
Seita.1G231200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 30726351-30728350 Setaria italica
Seita.1G231200 5.0kb upstream 5.0kb upstream 9863 true scaffold_1: 30716488-30726350 Setaria italica
Seita.1G231200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 30716488-30721487 Setaria italica
Seita.1G231200 5.0kb downstream 5.0kb downstream 9863 true scaffold_1: 30721488-30731350 Setaria italica
Seita.1G231200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 30726351-30731350 Setaria italica
Seita.1G231200 10.0kb upstream 10.0kb upstream 14863 true scaffold_1: 30711488-30726350 Setaria italica
Seita.1G231200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 30711488-30721487 Setaria italica
Seita.1G231200 10.0kb downstream 10.0kb downstream 14863 true scaffold_1: 30721488-30736350 Setaria italica
Seita.1G231200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 30726351-30736350 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190840 5267 Panicoideae View MSA
124577420 5269 Grass View MSA
122041646 5273 Angiosperm View MSA
121347886 5274 Embryophyte View MSA
123424828 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.897        
cufflinks 3.025        
cufflinks 2.514        
cufflinks 3.131        
cufflinks 3.697        
cufflinks 2.811        
cufflinks 5.42       High
cufflinks 2.426        
cufflinks 2.637        
cufflinks 1.934        
cufflinks 2.121        
cufflinks 2.674        
cufflinks 1.476       Low
cufflinks 1.772       Low
cufflinks 2.25        
cufflinks 10.535       High
cufflinks 2.646        
cufflinks 8.076       High
cufflinks 6.038       High
cufflinks 2.612        

0 Strain