Gene : Seita.1G238700 S. italica v2.2
Defline:  (1 of 1) PTHR12982 - PHOSPHATIDYLINOSITOL GLYCAN, CLASS C Genomic Order:  2387
Name:  ? Seita.1G238700 Secondary Identifier:  ? PAC:32697976
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G238700 0.5kb upstream 0.5kb upstream 2639 true scaffold_1: 31601362-31604000 Setaria italica
Seita.1G238700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 31603501-31604000 Setaria italica
Seita.1G238700 0.5kb downstream 0.5kb downstream 2639 true scaffold_1: 31600862-31603500 Setaria italica
Seita.1G238700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 31600862-31601361 Setaria italica
Seita.1G238700 1.0kb upstream 1.0kb upstream 3139 true scaffold_1: 31601362-31604500 Setaria italica
Seita.1G238700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 31603501-31604500 Setaria italica
Seita.1G238700 1.0kb downstream 1.0kb downstream 3139 true scaffold_1: 31600362-31603500 Setaria italica
Seita.1G238700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 31600362-31601361 Setaria italica
Seita.1G238700 2.0kb upstream 2.0kb upstream 4139 true scaffold_1: 31601362-31605500 Setaria italica
Seita.1G238700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 31603501-31605500 Setaria italica
Seita.1G238700 2.0kb downstream 2.0kb downstream 4139 true scaffold_1: 31599362-31603500 Setaria italica
Seita.1G238700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 31599362-31601361 Setaria italica
Seita.1G238700 5.0kb upstream 5.0kb upstream 7139 true scaffold_1: 31601362-31608500 Setaria italica
Seita.1G238700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 31603501-31608500 Setaria italica
Seita.1G238700 5.0kb downstream 5.0kb downstream 7139 true scaffold_1: 31596362-31603500 Setaria italica
Seita.1G238700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 31596362-31601361 Setaria italica
Seita.1G238700 10.0kb upstream 10.0kb upstream 12139 true scaffold_1: 31601362-31613500 Setaria italica
Seita.1G238700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 31603501-31613500 Setaria italica
Seita.1G238700 10.0kb downstream 10.0kb downstream 12139 true scaffold_1: 31591362-31603500 Setaria italica
Seita.1G238700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 31591362-31601361 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041331 5273 Angiosperm View MSA
122181868 5267 Panicoideae View MSA
124589317 5269 Grass View MSA
121345489 5274 Embryophyte View MSA
123426053 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.261        
cufflinks 5.582       High
cufflinks 1.835       Low
cufflinks 2.052       Low
cufflinks 2.472        
cufflinks 5.078       High
cufflinks 3.078        
cufflinks 3.388        
cufflinks 3.201        
cufflinks 3.331        
cufflinks 3.955        
cufflinks 3.593        
cufflinks 2.914        
cufflinks 1.351       Low
cufflinks 4.375       High
cufflinks 2.815        
cufflinks 3.942        
cufflinks 3.079        
cufflinks 1.48       Low
cufflinks 3.37        

0 Strain