Gene : Seita.1G161400 S. italica v2.2
Defline:  (1 of 1) PF16053 - Mitochondrial 28S ribosomal protein S34 (MRP-S34) Genomic Order:  1614
Name:  ? Seita.1G161400 Secondary Identifier:  ? PAC:32698320
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G161400 0.5kb upstream 0.5kb upstream 3386 true scaffold_1: 22814455-22817840 Setaria italica
Seita.1G161400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 22817341-22817840 Setaria italica
Seita.1G161400 0.5kb downstream 0.5kb downstream 3386 true scaffold_1: 22813955-22817340 Setaria italica
Seita.1G161400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 22813955-22814454 Setaria italica
Seita.1G161400 1.0kb upstream 1.0kb upstream 3886 true scaffold_1: 22814455-22818340 Setaria italica
Seita.1G161400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 22817341-22818340 Setaria italica
Seita.1G161400 1.0kb downstream 1.0kb downstream 3886 true scaffold_1: 22813455-22817340 Setaria italica
Seita.1G161400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 22813455-22814454 Setaria italica
Seita.1G161400 2.0kb upstream 2.0kb upstream 4886 true scaffold_1: 22814455-22819340 Setaria italica
Seita.1G161400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 22817341-22819340 Setaria italica
Seita.1G161400 2.0kb downstream 2.0kb downstream 4886 true scaffold_1: 22812455-22817340 Setaria italica
Seita.1G161400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 22812455-22814454 Setaria italica
Seita.1G161400 5.0kb upstream 5.0kb upstream 7886 true scaffold_1: 22814455-22822340 Setaria italica
Seita.1G161400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 22817341-22822340 Setaria italica
Seita.1G161400 5.0kb downstream 5.0kb downstream 7886 true scaffold_1: 22809455-22817340 Setaria italica
Seita.1G161400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 22809455-22814454 Setaria italica
Seita.1G161400 10.0kb upstream 10.0kb upstream 12886 true scaffold_1: 22814455-22827340 Setaria italica
Seita.1G161400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 22817341-22827340 Setaria italica
Seita.1G161400 10.0kb downstream 10.0kb downstream 12886 true scaffold_1: 22804455-22817340 Setaria italica
Seita.1G161400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 22804455-22814454 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187895 5267 Panicoideae View MSA
124586389 5269 Grass View MSA
122043343 5273 Angiosperm View MSA
121350318 5274 Embryophyte View MSA
123423853 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.09        
cufflinks 2.004        
cufflinks 0.869        
cufflinks 0.729       Low
cufflinks 0.626       Low
cufflinks 2.096        
cufflinks 0.964        
cufflinks 1.916        
cufflinks 1.37        
cufflinks 2.53       High
cufflinks 1.193        
cufflinks 1.931        
cufflinks 1.311        
cufflinks 1.612        
cufflinks 1.771        
cufflinks 0.681       Low
cufflinks 2.952       High
cufflinks 0.779       Low
cufflinks 0.701       Low
cufflinks 2.165       High

0 Strain