Gene : Seita.1G162000 S. italica v2.2
Defline:  (1 of 2) PTHR23083:SF364 - UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT Genomic Order:  1620
Name:  ? Seita.1G162000 Secondary Identifier:  ? PAC:32698466
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7437 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G162000 0.5kb upstream 0.5kb upstream 10866 true scaffold_1: 22993696-23004561 Setaria italica
Seita.1G162000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 23004062-23004561 Setaria italica
Seita.1G162000 0.5kb downstream 0.5kb downstream 10866 true scaffold_1: 22993196-23004061 Setaria italica
Seita.1G162000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 22993196-22993695 Setaria italica
Seita.1G162000 1.0kb upstream 1.0kb upstream 11366 true scaffold_1: 22993696-23005061 Setaria italica
Seita.1G162000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 23004062-23005061 Setaria italica
Seita.1G162000 1.0kb downstream 1.0kb downstream 11366 true scaffold_1: 22992696-23004061 Setaria italica
Seita.1G162000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 22992696-22993695 Setaria italica
Seita.1G162000 2.0kb upstream 2.0kb upstream 12366 true scaffold_1: 22993696-23006061 Setaria italica
Seita.1G162000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 23004062-23006061 Setaria italica
Seita.1G162000 2.0kb downstream 2.0kb downstream 12366 true scaffold_1: 22991696-23004061 Setaria italica
Seita.1G162000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 22991696-22993695 Setaria italica
Seita.1G162000 5.0kb upstream 5.0kb upstream 15366 true scaffold_1: 22993696-23009061 Setaria italica
Seita.1G162000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 23004062-23009061 Setaria italica
Seita.1G162000 5.0kb downstream 5.0kb downstream 15366 true scaffold_1: 22988696-23004061 Setaria italica
Seita.1G162000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 22988696-22993695 Setaria italica
Seita.1G162000 10.0kb upstream 10.0kb upstream 20366 true scaffold_1: 22993696-23014061 Setaria italica
Seita.1G162000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 23004062-23014061 Setaria italica
Seita.1G162000 10.0kb downstream 10.0kb downstream 20366 true scaffold_1: 22983696-23004061 Setaria italica
Seita.1G162000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 22983696-22993695 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188319 5267 Panicoideae View MSA
124589128 5269 Grass View MSA
122047286 5273 Angiosperm View MSA
121344424 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.231     High High
cufflinks 30.011     High High
cufflinks 11.303     High Low
cufflinks 10.707       Low
cufflinks 10.709     High Low
cufflinks 27.801     High High
cufflinks 16.557     High  
cufflinks 16.525     High  
cufflinks 16.399     High  
cufflinks 17.927     High  
cufflinks 24.368     High  
cufflinks 16.163     High  
cufflinks 20.341     High  
cufflinks 10.167       Low
cufflinks 14.726     High  
cufflinks 20.118     High  
cufflinks 12.817        
cufflinks 31.169     High High
cufflinks 15.861     High  
cufflinks 12.778        

0 Strain