Gene : Seita.1G164200 S. italica v2.2
Defline:  (1 of 4) 3.2.2.27 - Uracil-DNA glycosylase / Uracil-DNA N-glycosylase Genomic Order:  1642
Name:  ? Seita.1G164200 Secondary Identifier:  ? PAC:32695112
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G164200 0.5kb upstream 0.5kb upstream 16250 true scaffold_1: 23626765-23643014 Setaria italica
Seita.1G164200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 23642515-23643014 Setaria italica
Seita.1G164200 0.5kb downstream 0.5kb downstream 16250 true scaffold_1: 23626265-23642514 Setaria italica
Seita.1G164200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 23626265-23626764 Setaria italica
Seita.1G164200 1.0kb upstream 1.0kb upstream 16750 true scaffold_1: 23626765-23643514 Setaria italica
Seita.1G164200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 23642515-23643514 Setaria italica
Seita.1G164200 1.0kb downstream 1.0kb downstream 16750 true scaffold_1: 23625765-23642514 Setaria italica
Seita.1G164200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 23625765-23626764 Setaria italica
Seita.1G164200 2.0kb upstream 2.0kb upstream 17750 true scaffold_1: 23626765-23644514 Setaria italica
Seita.1G164200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 23642515-23644514 Setaria italica
Seita.1G164200 2.0kb downstream 2.0kb downstream 17750 true scaffold_1: 23624765-23642514 Setaria italica
Seita.1G164200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 23624765-23626764 Setaria italica
Seita.1G164200 5.0kb upstream 5.0kb upstream 20750 true scaffold_1: 23626765-23647514 Setaria italica
Seita.1G164200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 23642515-23647514 Setaria italica
Seita.1G164200 5.0kb downstream 5.0kb downstream 20750 true scaffold_1: 23621765-23642514 Setaria italica
Seita.1G164200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 23621765-23626764 Setaria italica
Seita.1G164200 10.0kb upstream 10.0kb upstream 25750 true scaffold_1: 23626765-23652514 Setaria italica
Seita.1G164200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 23642515-23652514 Setaria italica
Seita.1G164200 10.0kb downstream 10.0kb downstream 25750 true scaffold_1: 23616765-23642514 Setaria italica
Seita.1G164200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 23616765-23626764 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192203 5267 Panicoideae View MSA
124590070 5269 Grass View MSA
122044419 5273 Angiosperm View MSA
121348532 5274 Embryophyte View MSA
123428690 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.081     High High
cufflinks 22.433     High High
cufflinks 6.945       Low
cufflinks 6.99       Low
cufflinks 12.649     High  
cufflinks 22.156     High High
cufflinks 19.695     High  
cufflinks 12.726        
cufflinks 22.114     High High
cufflinks 8.591        
cufflinks 21.925     High High
cufflinks 10.564        
cufflinks 16.716     High  
cufflinks 5.77       Low
cufflinks 16.523     High  
cufflinks 14.164     High  
cufflinks 9.923        
cufflinks 16.857     High  
cufflinks 4.067       Low
cufflinks 11.053        

0 Strain