Gene : Seita.1G167800 S. italica v2.2
Genomic Order:  1678 Name:  ? Seita.1G167800
Secondary Identifier:  ? PAC:32697964
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G167800 0.5kb upstream 0.5kb upstream 4452 true scaffold_1: 24010498-24014949 Setaria italica
Seita.1G167800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 24010498-24010997 Setaria italica
Seita.1G167800 0.5kb downstream 0.5kb downstream 4452 true scaffold_1: 24010998-24015449 Setaria italica
Seita.1G167800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 24014950-24015449 Setaria italica
Seita.1G167800 1.0kb upstream 1.0kb upstream 4952 true scaffold_1: 24009998-24014949 Setaria italica
Seita.1G167800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 24009998-24010997 Setaria italica
Seita.1G167800 1.0kb downstream 1.0kb downstream 4952 true scaffold_1: 24010998-24015949 Setaria italica
Seita.1G167800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 24014950-24015949 Setaria italica
Seita.1G167800 2.0kb upstream 2.0kb upstream 5952 true scaffold_1: 24008998-24014949 Setaria italica
Seita.1G167800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 24008998-24010997 Setaria italica
Seita.1G167800 2.0kb downstream 2.0kb downstream 5952 true scaffold_1: 24010998-24016949 Setaria italica
Seita.1G167800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 24014950-24016949 Setaria italica
Seita.1G167800 5.0kb upstream 5.0kb upstream 8952 true scaffold_1: 24005998-24014949 Setaria italica
Seita.1G167800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 24005998-24010997 Setaria italica
Seita.1G167800 5.0kb downstream 5.0kb downstream 8952 true scaffold_1: 24010998-24019949 Setaria italica
Seita.1G167800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 24014950-24019949 Setaria italica
Seita.1G167800 10.0kb upstream 10.0kb upstream 13952 true scaffold_1: 24000998-24014949 Setaria italica
Seita.1G167800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 24000998-24010997 Setaria italica
Seita.1G167800 10.0kb downstream 10.0kb downstream 13952 true scaffold_1: 24010998-24024949 Setaria italica
Seita.1G167800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 24014950-24024949 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187385 5267 Panicoideae View MSA
124587279 5269 Grass View MSA
122050340 5273 Angiosperm View MSA
121351123 5274 Embryophyte View MSA
123382016 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.128        
cufflinks 1.901        
cufflinks 0.005     Low Low
cufflinks 0.036     Low Low
cufflinks 0.038     Low Low
cufflinks 1.565        
cufflinks 0.77        
cufflinks 0.436        
cufflinks 0.137        
cufflinks 4.286        
cufflinks 9.013       High
cufflinks 1.554        
cufflinks 3.501        
cufflinks 0.012     Low Low
cufflinks 5.485       High
cufflinks 0.268        
cufflinks 3.832        
cufflinks 0.029     Low Low
cufflinks 0.043     Low Low
cufflinks 4.461        

0 Strain