Gene : Seita.1G168600 S. italica v2.2
Defline:  (1 of 2) PF04359 - Protein of unknown function (DUF493) (DUF493) Genomic Order:  1686
Name:  ? Seita.1G168600 Secondary Identifier:  ? PAC:32696743
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G168600 0.5kb upstream 0.5kb upstream 4690 true scaffold_1: 24142561-24147250 Setaria italica
Seita.1G168600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 24142561-24143060 Setaria italica
Seita.1G168600 0.5kb downstream 0.5kb downstream 4690 true scaffold_1: 24143061-24147750 Setaria italica
Seita.1G168600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 24147251-24147750 Setaria italica
Seita.1G168600 1.0kb upstream 1.0kb upstream 5190 true scaffold_1: 24142061-24147250 Setaria italica
Seita.1G168600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 24142061-24143060 Setaria italica
Seita.1G168600 1.0kb downstream 1.0kb downstream 5190 true scaffold_1: 24143061-24148250 Setaria italica
Seita.1G168600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 24147251-24148250 Setaria italica
Seita.1G168600 2.0kb upstream 2.0kb upstream 6190 true scaffold_1: 24141061-24147250 Setaria italica
Seita.1G168600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 24141061-24143060 Setaria italica
Seita.1G168600 2.0kb downstream 2.0kb downstream 6190 true scaffold_1: 24143061-24149250 Setaria italica
Seita.1G168600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 24147251-24149250 Setaria italica
Seita.1G168600 5.0kb upstream 5.0kb upstream 9190 true scaffold_1: 24138061-24147250 Setaria italica
Seita.1G168600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 24138061-24143060 Setaria italica
Seita.1G168600 5.0kb downstream 5.0kb downstream 9190 true scaffold_1: 24143061-24152250 Setaria italica
Seita.1G168600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 24147251-24152250 Setaria italica
Seita.1G168600 10.0kb upstream 10.0kb upstream 14190 true scaffold_1: 24133061-24147250 Setaria italica
Seita.1G168600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 24133061-24143060 Setaria italica
Seita.1G168600 10.0kb downstream 10.0kb downstream 14190 true scaffold_1: 24143061-24157250 Setaria italica
Seita.1G168600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 24147251-24157250 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194037 5267 Panicoideae View MSA
124588166 5269 Grass View MSA
122048054 5273 Angiosperm View MSA
121348978 5274 Embryophyte View MSA
123426420 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.215        
cufflinks 7.883        
cufflinks 28.96     High High
cufflinks 26.691     High High
cufflinks 23.326     High High
cufflinks 8.647        
cufflinks 9.166        
cufflinks 32.584     High High
cufflinks 15.977     High  
cufflinks 5.561        
cufflinks 4.228        
cufflinks 3.024       Low
cufflinks 4.943        
cufflinks 35.515     High High
cufflinks 4.351        
cufflinks 12.147     High  
cufflinks 5.494        
cufflinks 5.397        
cufflinks 27.043     High High
cufflinks 3.343       Low

0 Strain